RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SLC29A4Q7RTT9 530 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 PARP8Q8N3A8 854 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 ELOA3Q8NG57 546 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 SMPDL3AQ92484 453 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 MCMBPQ9BTE3 642 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 MVB12BQ9H7P6 319 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 CARS2Q9HA77 564 aaKnown RBP7.55□□□□□ -1.2
VPS13D-211ENST00000543710 NKIRAS2Q9NYR9 191 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 SCP2D1Q9UJQ7 156 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 RNF6Q9Y252 685 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 LOXHD1Q8IVV2 1947 aa7.55□□□□□ -1.2
VPS13D-211ENST00000543710 GPR89AB7ZAQ6 455 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 OR4F21O95013 312 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 GPR89BP0CG08 455 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CD40LGP29965 261 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CD6P30203 668 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 RORAP35398 523 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 MAP3K8P41279 467 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 DSC1Q08554 894 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 KHDC1Q4VXA5 237 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SIRPB2Q5JXA9 342 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 LRP10Q7Z4F1 713 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SLC15A3Q8IY34 581 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 PCDH19Q8TAB3 1148 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 GPER1Q99527 375 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 FOLH1BQ9HBA9 442 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ARMC1Q9NVT9 282 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CYTH4Q9UIA0 394 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 LINC00854A0A1B0GVQ3 168 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF208O43345 1280 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 USP12O75317 370 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 HSD17B1P14061 328 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 EIF2S3P41091 472 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 DGKQP52824 942 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 PHC1P78364 1004 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CRADDP78560 199 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 DSC2Q02487 901 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CRTC2Q53ET0 693 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 FRG2Q64ET8 278 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CXorf57Q6NSI4 855 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 HSDL2Q6YN16 418 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ZNF767PQ75MW2 155 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 LRRTM4Q86VH4 590 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 NPAS3Q8IXF0 933 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SPEM1Q8N4L4 309 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 DCAF4L2Q8NA75 395 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SMG8Q8ND04 991 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ZMIZ2Q8NF64 920 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 FCAMRQ8WWV6 532 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 TMBIM1Q969X1 311 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 FRG2BQ96QU4 278 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 YIPF4Q9BSR8 244 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CENPOQ9BU64 300 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 OSBPL7Q9BZF2 842 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 HSFX1Q9UBD0 423 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 NFS1Q9Y697 457 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 OR2AT4A6NND4 320 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 TP53I11O14683 189 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CDK2P24941 298 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 LCN1P31025 176 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SLC11A1P49279 550 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 NIPAL4Q0D2K0 466 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 PCLAFQ15004 111 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CPSF6Q16630 551 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 MYLK3Q32MK0 819 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 TMEM240Q5SV17 173 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 UBXN11Q5T124 520 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 IDNKQ5T6J7 187 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SLC30A6Q6NXT4 461 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 PLEKHG7Q6ZR37 379 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CMC1Q7Z7K0 106 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 C14orf80Q86SX3 495 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 THOC6Q86W42 341 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 NRROSQ86YC3 692 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 C1orf52Q8N6N3 182 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 AGBL5Q8NDL9 886 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 OR8H1Q8NGG4 311 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 TNFAIP8L1Q8WVP5 186 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SLC41A3Q96GZ6 507 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 PIP5K1AQ99755 562 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 VRK1Q99986 396 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 LPIN3Q9BQK8 851 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ARRDC1-AS1Q9H2J1 176 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 CHRAC1Q9NRG0 131 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 KLRG2A4D1S0 409 aaPredicted RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 SCN2BO60939 215 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ZMPSTE24O75844 475 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 RLN1P04808 185 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 JUNDP17535 347 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 RPS21P63220 83 aaKnown RBP7.54□□□□□ -1.2
VPS13D-211ENST00000543710 ADAM8P78325 824 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 MS4A13Q5J8X5 152 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 FAM69AQ5T7M9 428 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 GLT8D1Q68CQ7 371 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 WDR88Q6ZMY6 472 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 Q7L0L9 218 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 LGI4Q8N135 537 aa7.54□□□□□ -1.2
VPS13D-211ENST00000543710 DNAJC22Q8N4W6 341 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms