RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZNF358Q9NW07 568 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 PLA2G3Q9NZ20 509 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 MAP10Q9P2G4 905 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 NTNG1Q9Y2I2 539 aa13.91□□□□□ -0.18
USP28-204ENST00000537642 ASH1LQ9NR48 2969 aaKnown RBP13.91□□□□□ -0.18
USP28-204ENST00000537642 A0A087WUV0 522 aaPredicted RBP13.9□□□□□ -0.18
USP28-204ENST00000537642 LRRC14BA6NHZ5 514 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 POC1B-GALNT4F8VUJ3 575 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 KLK8O60259 260 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 RHOXF2BP0C7M4 288 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 MSH2P43246 934 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 OR4D2P58180 307 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 ACTN3Q08043 901 aaPredicted RBP13.9□□□□□ -0.18
USP28-204ENST00000537642 NAA30Q147X3 362 aaPredicted RBP13.9□□□□□ -0.18
USP28-204ENST00000537642 ZNF169Q14929 603 aaPredicted RBP13.9□□□□□ -0.18
USP28-204ENST00000537642 SETDB1Q15047 1291 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 HIST2H2ACQ16777 129 aaPredicted RBP13.9□□□□□ -0.18
USP28-204ENST00000537642 PFKFB4Q16877 469 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 TECRLQ5HYJ1 363 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 PAGE2BQ5JRK9 111 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 HIST2H2AA3Q6FI13 130 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 KLC3Q6P597 504 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 IFT20Q8IY31 132 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 TEX9Q8N6V9 391 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 LRRN4CLQ8ND94 238 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 OR2L5Q8NG80 312 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 FAR2Q96K12 515 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 PTCHD1Q96NR3 888 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 F2RL3Q96RI0 385 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 RHOXF2Q9BQY4 288 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 REXO4Q9GZR2 422 aaKnown RBP13.9□□□□□ -0.18
USP28-204ENST00000537642 ZNF180Q9UJW8 692 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 IKBKGQ9Y6K9 419 aa13.9□□□□□ -0.18
USP28-204ENST00000537642 IGKV3D-11A0A0A0MRZ8 115 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 TCP11X1B4DZS4 312 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 PSMD12O00232 456 aaPredicted RBP13.89□□□□□ -0.19
USP28-204ENST00000537642 PRMT3O60678 531 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 KRT38O76015 456 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 UQCRHP07919 91 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 ABHD2P08910 425 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 GFAPP14136 432 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 MAOAP21397 527 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 TSFMP43897 325 aaKnown RBP13.89□□□□□ -0.19
USP28-204ENST00000537642 PLA2G16P53816 162 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 ALDH18A1P54886 795 aaKnown RBP13.89□□□□□ -0.19
USP28-204ENST00000537642 ARG2P78540 354 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 TLR1Q15399 786 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 EXT1Q16394 746 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 H3F3CQ6NXT2 135 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 TRIM40Q6P9F5 258 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 ABHD17CQ6PCB6 329 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 TAOK1Q7L7X3 1001 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 LAS2Q8IYD9 372 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 M1APQ8TC57 530 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 ZNF473Q8WTR7 871 aaKnown RBP13.89□□□□□ -0.19
USP28-204ENST00000537642 HAS2Q92819 552 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 LPAR4Q99677 370 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 BARD1Q99728 777 aaKnown RBP13.89□□□□□ -0.19
USP28-204ENST00000537642 NPLQ9BXD5 320 aaPredicted RBP13.89□□□□□ -0.19
USP28-204ENST00000537642 MMP25Q9NPA2 562 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 NECTIN3Q9NQS3 549 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 PRDM9Q9NQV7 894 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 CPSF2Q9P2I0 782 aaKnown RBP13.89□□□□□ -0.19
USP28-204ENST00000537642 COPG1Q9Y678 874 aaKnown RBP13.89□□□□□ -0.19
USP28-204ENST00000537642 COL12A1Q99715 3063 aa13.89□□□□□ -0.19
USP28-204ENST00000537642 SVILO95425 2214 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 TCRBV16S1A1N1A0A5B0 115 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 DYTNA2CJ06 578 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 A8MUI8 341 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 TRIM49D1C9J1S8 452 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 B3GALT2O43825 422 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 WDPCPO95876 746 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 F10P00742 488 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 FAM153BP0C7A2 387 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 EPB42P16452 691 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 CNTFP26441 200 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 CERS1P27544 350 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 GCAP28676 217 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 HPDP32754 393 aaPredicted RBP13.88□□□□□ -0.19
USP28-204ENST00000537642 TNFSF10P50591 281 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 RAB38P57729 211 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 SLC26A5P58743 744 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 ZNF33BQ06732 778 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 MRPL49Q13405 166 aaKnown RBP13.88□□□□□ -0.19
USP28-204ENST00000537642 UBAP2LQ14157 1087 aaKnown RBP13.88□□□□□ -0.19
USP28-204ENST00000537642 PCBP2Q15366 365 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP28-204ENST00000537642 FAM153CQ494X1 144 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 ABHD17BQ5VST6 288 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 FCRLBQ6BAA4 426 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 GRHL2Q6ISB3 625 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 MED27Q6P2C8 311 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 TRMT10CQ7L0Y3 403 aaKnown RBP13.88□□□□□ -0.19
USP28-204ENST00000537642 UBE3DQ7Z6J8 389 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 TMEM52Q8NDY8 209 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 OR7G3Q8NG95 312 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 OR1N1Q8NGS0 311 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 UBE2E3Q969T4 207 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 MAGEB10Q96LZ2 347 aaPredicted RBP13.88□□□□□ -0.19
USP28-204ENST00000537642 SERINC2Q96SA4 455 aa13.88□□□□□ -0.19
USP28-204ENST00000537642 MS4A8Q9BY19 250 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms