RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 CEBPBP17676 345 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 IRS1P35568 1242 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 HTRA4P83105 476 aaPredicted RBP12.61□□□□□ -0.39
LDLR-203ENST00000535915 SPIBQ01892 262 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 IFI44LQ53G44 452 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 CCDC177Q9NQR7 707 aaPredicted RBP12.61□□□□□ -0.39
LDLR-203ENST00000535915 ITM2CQ9NQX7 267 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 RNF6Q9Y252 685 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 TSC22D4Q9Y3Q8 395 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 CDH23Q9H251 3354 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 LZTS3O60299 673 aaPredicted RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 MRPS14O60783 128 aaKnown RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 GPR37L1O60883 481 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 SULT1C4O75897 302 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 NADKO95544 446 aaPredicted RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 CTNNB1P35222 781 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 SOAT1P35610 550 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 RPL3P39023 403 aaKnown RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 CDH12P55289 794 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 HTRA3P83110 453 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 FCHO2Q0JRZ9 810 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 DGUOKQ16854 277 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 CYP27C1Q4G0S4 372 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 PRSS36Q5K4E3 855 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 C10orf62Q5T681 223 aaPredicted RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 TRIM40Q6P9F5 258 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 NXPE4Q6UWF7 544 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 RNF130Q86XS8 419 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.6□□□□□ -0.39
LDLR-203ENST00000535915 SLC5A8Q8N695 610 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 ZNF740Q8NDX6 193 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 OR10G2Q8NGC3 310 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 CHPT1Q8WUD6 406 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 POF1BQ8WVV4 589 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 DNASE1L2Q92874 299 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 TAMM41Q96BW9 452 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 TMEM121BQ9BXQ6 578 aaPredicted RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 B3GNT3Q9Y2A9 372 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 TMEM98Q9Y2Y6 226 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 INSL6Q9Y581 213 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 MMP20O60882 483 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 LCKP06239 509 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 NCS1P62166 190 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 NFE2L1Q14494 772 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 MPEG1Q2M385 716 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 FNDC3BQ53EP0 1204 aaKnown RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 BTLAQ7Z6A9 289 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 OXR1Q8N573 874 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 C2orf73Q8N5S3 287 aaPredicted RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 PAWRQ96IZ0 340 aaKnown RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 LRRC3BQ96PB8 259 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 ZNF300Q96RE9 604 aaPredicted RBP12.6□□□□□ -0.39
LDLR-203ENST00000535915 EHD1Q9H4M9 534 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 TRIM39Q9HCM9 518 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 MYNNQ9NPC7 610 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 TAS2R9Q9NYW1 312 aa12.6□□□□□ -0.39
LDLR-203ENST00000535915 POP7O75817 140 aaKnown RBP12.59□□□□□ -0.39
LDLR-203ENST00000535915 C6P13671 934 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 SERPINB10P48595 397 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 CSNK2BP67870 215 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 RBBP4Q09028 425 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 ELP6Q0PNE2 266 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 MESP2Q0VG99 397 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 FADDQ13158 208 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 PDE7AQ13946 482 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 SLC5A12Q1EHB4 618 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 FAM71E1Q6IPT2 247 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 ADCK1Q86TW2 530 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 ZNF547Q8IVP9 402 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 LRRC56Q8IYG6 542 aaPredicted RBP12.59□□□□□ -0.39
LDLR-203ENST00000535915 WFIKKN2Q8TEU8 576 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 NXPE3Q969Y0 559 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 ARRDC3Q96B67 414 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 COPS4Q9BT78 406 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 WDR12Q9GZL7 423 aaKnown RBP12.59□□□□□ -0.39
LDLR-203ENST00000535915 MIEF1Q9NQG6 463 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 C1GALT1Q9NS00 363 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 RLIMQ9NVW2 624 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 A0A1W2PRB8 838 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 SOBPA7XYQ1 873 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 E9PQ18 207 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 IL3P08700 152 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 CD36P16671 472 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 ITGB7P26010 798 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 GGT2P36268 569 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 VASPP50552 380 aaPredicted RBP12.59□□□□□ -0.39
LDLR-203ENST00000535915 CDK6Q00534 326 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 NANOGNBQ7Z5D8 188 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 LGI4Q8N135 537 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 METTL4Q8N3J2 472 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 IL17FQ96PD4 163 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 SORBS1Q9BX66 1292 aaKnown RBP12.59□□□□□ -0.39
LDLR-203ENST00000535915 SAGE1Q9NXZ1 904 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.59□□□□□ -0.39
LDLR-203ENST00000535915 PLAGL1Q9UM63 463 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 ASF1AQ9Y294 204 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 PRKAB1Q9Y478 270 aa12.59□□□□□ -0.39
LDLR-203ENST00000535915 NUP210Q8TEM1 1887 aaPredicted RBP12.58□□□□□ -0.39
LDLR-203ENST00000535915 OR2A25A4D2G3 310 aa12.58□□□□□ -0.39
LDLR-203ENST00000535915 PRRT4C9JH25 899 aa12.58□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms