RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 ZNF33BQ06732 778 aa13□□□□□ -0.33
CD44-224ENST00000526669 ACSM2AQ08AH3 577 aa13□□□□□ -0.33
CD44-224ENST00000526669 TBL3Q12788 808 aaKnown RBP13□□□□□ -0.33
CD44-224ENST00000526669 CUL3Q13618 768 aa13□□□□□ -0.33
CD44-224ENST00000526669 FAM53BQ14153 422 aa13□□□□□ -0.33
CD44-224ENST00000526669 RTP5Q14D33 572 aa13□□□□□ -0.33
CD44-224ENST00000526669 HERC3Q15034 1050 aa13□□□□□ -0.33
CD44-224ENST00000526669 AP5B1Q2VPB7 878 aa13□□□□□ -0.33
CD44-224ENST00000526669 TMEM35AQ53FP2 167 aa13□□□□□ -0.33
CD44-224ENST00000526669 XKR7Q5GH72 579 aa13□□□□□ -0.33
CD44-224ENST00000526669 ZNF385CQ66K41 422 aaPredicted RBP13□□□□□ -0.33
CD44-224ENST00000526669 ACSM2BQ68CK6 577 aa13□□□□□ -0.33
CD44-224ENST00000526669 OR4C11Q6IEV9 310 aa13□□□□□ -0.33
CD44-224ENST00000526669 CGB2Q6NT52 195 aa13□□□□□ -0.33
CD44-224ENST00000526669 C6orf15Q6UXA7 325 aaPredicted RBP13□□□□□ -0.33
CD44-224ENST00000526669 COMMD6Q7Z4G1 85 aa13□□□□□ -0.33
CD44-224ENST00000526669 TRIM46Q7Z4K8 759 aa13□□□□□ -0.33
CD44-224ENST00000526669 KIRREL3Q8IZU9 778 aa13□□□□□ -0.33
CD44-224ENST00000526669 METTL4Q8N3J2 472 aa13□□□□□ -0.33
CD44-224ENST00000526669 RFWD2Q8NHY2 731 aa13□□□□□ -0.33
CD44-224ENST00000526669 COL26A1Q96A83 441 aa13□□□□□ -0.33
CD44-224ENST00000526669 TUBGCP3Q96CW5 907 aa13□□□□□ -0.33
CD44-224ENST00000526669 GBP5Q96PP8 586 aa13□□□□□ -0.33
CD44-224ENST00000526669 KCNC2Q96PR1 638 aa13□□□□□ -0.33
CD44-224ENST00000526669 C1orf50Q9BV19 199 aa13□□□□□ -0.33
CD44-224ENST00000526669 ZNF717Q9BY31 904 aaPredicted RBP13□□□□□ -0.33
CD44-224ENST00000526669 RBCK1Q9BYM8 510 aa13□□□□□ -0.33
CD44-224ENST00000526669 RABEP2Q9H5N1 569 aa13□□□□□ -0.33
CD44-224ENST00000526669 WDR55Q9H6Y2 383 aaPredicted RBP13□□□□□ -0.33
CD44-224ENST00000526669 LRTM1Q9HBL6 345 aa13□□□□□ -0.33
CD44-224ENST00000526669 NPHS2Q9NP85 383 aa13□□□□□ -0.33
CD44-224ENST00000526669 PRDM7Q9NQW5 492 aa13□□□□□ -0.33
CD44-224ENST00000526669 ENAMQ9NRM1 1142 aa13□□□□□ -0.33
CD44-224ENST00000526669 PSD3Q9NYI0 1048 aa13□□□□□ -0.33
CD44-224ENST00000526669 CCL27Q9Y4X3 112 aa13□□□□□ -0.33
CD44-224ENST00000526669 POLR3HQ9Y535 204 aaPredicted RBP13□□□□□ -0.33
CD44-224ENST00000526669 SLC22A7Q9Y694 548 aa13□□□□□ -0.33
CD44-224ENST00000526669 URB1O60287 2271 aaKnown RBP13□□□□□ -0.33
CD44-224ENST00000526669 DOCK10Q96BY6 2186 aa13□□□□□ -0.33
CD44-224ENST00000526669 ARHGAP10A1A4S6 786 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 MEN1O00255 615 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 ZNF195O14628 629 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 LSM1O15116 133 aaKnown RBP12.99□□□□□ -0.33
CD44-224ENST00000526669 B3GALT2O43825 422 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 RAD1O60671 282 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 DIAPH2O60879 1101 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 SEC22BO75396 215 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 RSL1D1O76021 490 aaKnown RBP12.99□□□□□ -0.33
CD44-224ENST00000526669 SEMA3DO95025 777 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 KLK1P06870 262 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 EPHA3P29320 983 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 LSP1P33241 339 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 SEC24CP53992 1094 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 EMP3P54852 163 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 FOXL2P58012 376 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 RAE1P78406 368 aaKnown RBP12.99□□□□□ -0.33
CD44-224ENST00000526669 RUNX2Q13950 521 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 NXNQ6DKJ4 435 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 RNF165Q6ZSG1 346 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 COX15Q7KZN9 410 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 NUDT13Q86X67 352 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 CA13Q8N1Q1 262 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 EFCAB3Q8N7B9 438 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 ACOT4Q8N9L9 421 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 SRFBP1Q8NEF9 429 aaKnown RBP12.99□□□□□ -0.33
CD44-224ENST00000526669 CDC26Q8NHZ8 85 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 PROKR1Q8TCW9 393 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 CHTF18Q8WVB6 975 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 ZNF317Q96PQ6 595 aaPredicted RBP12.99□□□□□ -0.33
CD44-224ENST00000526669 MAPKAP1Q9BPZ7 522 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 TBCDQ9BTW9 1192 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 FAM107BQ9H098 131 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 CHST8Q9H2A9 424 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 AKTIPQ9H8T0 292 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 MEAF6Q9HAF1 191 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 ZNF304Q9HCX3 659 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 RIC8BQ9NVN3 520 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 NMRK1Q9NWW6 199 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 C1orf109Q9NX04 203 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 AHSPQ9NZD4 102 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 VTI1BQ9UEU0 232 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 DCTN4Q9UJW0 460 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 FBXW2Q9UKT8 454 aa12.99□□□□□ -0.33
CD44-224ENST00000526669 MED13Q9UHV7 2174 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 IGF2RP11717 2491 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 TRPC5OSA6NMA1 111 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 SLCO1B7G3V0H7 640 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 CHST10O43529 356 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 TMPRSS11DO60235 418 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 PCDH7O60245 1069 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 DXOO77932 396 aaKnown RBP12.98□□□□□ -0.33
CD44-224ENST00000526669 KLK3P07288 261 aaPredicted RBP12.98□□□□□ -0.33
CD44-224ENST00000526669 HIST1H1TP22492 207 aaPredicted RBP12.98□□□□□ -0.33
CD44-224ENST00000526669 TPP2P29144 1249 aaPredicted RBP12.98□□□□□ -0.33
CD44-224ENST00000526669 TIA1P31483 386 aaKnown RBP eCLIP12.98□□□□□ -0.33
CD44-224ENST00000526669 HK2P52789 917 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 AQP5P55064 265 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 MTTPP55157 894 aa12.98□□□□□ -0.33
CD44-224ENST00000526669 HNRNPH2P55795 449 aaKnown RBP12.98□□□□□ -0.33
CD44-224ENST00000526669 DCDP81605 110 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms