RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ARHGAP21Q5T5U3 1957 aa13.31□□□□□ -0.28
CPSF1-201ENST00000526271 FAM90A27PA6NNH2 459 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 PRRG2O14669 202 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 PFDN6O15212 129 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 PEX1O43933 1283 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 TPOP07202 933 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 C8GP07360 202 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 SLC35G6P0C7Q6 338 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 PAMP19021 973 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 IL10P22301 178 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 MSX1P28360 303 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 PTGS2P35354 604 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 HNF4AP41235 474 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 DLX5P56178 289 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 NUP107P57740 925 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 REEP5Q00765 189 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 THOC5Q13769 683 aaKnown RBP13.3□□□□□ -0.28
CPSF1-201ENST00000526271 RUNX2Q13950 521 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 RTL6Q6ICC9 239 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 SBSNQ6UWP8 590 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 STRA8Q7Z7C7 330 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 SCUBE1Q8IWY4 988 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 CYP4X1Q8N118 509 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 CA13Q8N1Q1 262 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 LILRB4Q8NHJ6 448 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 CA5BP1Q8WTZ4 195 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 CHTF18Q8WVB6 975 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 MAIP1Q8WWC4 291 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 TSNARE1Q96NA8 513 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 LIME1Q9H400 295 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 RNF14Q9UBS8 474 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 TRMT6Q9UJA5 497 aaKnown RBP13.3□□□□□ -0.28
CPSF1-201ENST00000526271 PPIEQ9UNP9 301 aaKnown RBP13.3□□□□□ -0.28
CPSF1-201ENST00000526271 KIAA1549Q9HCM3 1950 aa13.3□□□□□ -0.28
CPSF1-201ENST00000526271 TRBV11-1A0A0K0K1C0 115 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 SLC16A5O15375 505 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 PRMT3O60678 531 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 PRAMEF4O60810 478 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 PDE9AO76083 593 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 AHSGP02765 367 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 CCR8P51685 355 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 TAS2R50P59544 299 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 SP140Q13342 867 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 PPP1R3AQ16821 1122 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 PRAMEF9Q5VWM5 478 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 KIAA0408Q6ZU52 694 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 LIX1LQ8IVB5 337 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 SREK1Q8WXA9 508 aaKnown RBP13.29□□□□□ -0.28
CPSF1-201ENST00000526271 FBXL8Q96CD0 374 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 SEC16BQ96JE7 1060 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 TMUB1Q9BVT8 246 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 ZFP69BQ9UJL9 534 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 FAM215AQ9Y5M1 114 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 COMMD10Q9Y6G5 202 aa13.29□□□□□ -0.28
CPSF1-201ENST00000526271 A0A0G2JN53 185 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 MYOCOSA0A1B0GUC4 107 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 MAGEB16A2A368 324 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 PGRMC1O00264 195 aaKnown RBP13.28□□□□□ -0.28
CPSF1-201ENST00000526271 CDK2AP1O14519 115 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 CDC40O60508 579 aaKnown RBP eCLIP13.28□□□□□ -0.28
CPSF1-201ENST00000526271 ITGA10O75578 1167 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 MLYCDO95822 493 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 SERPIND1P05546 499 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 CRYMQ14894 314 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 CYP1B1Q16678 543 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 C18orf21Q32NC0 220 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-201ENST00000526271 DUPD1Q68J44 220 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 ADNP2Q6IQ32 1131 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 VN1R5Q7Z5H4 357 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 CNTN4Q8IWV2 1026 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 HORMAD2Q8N7B1 307 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 ZNF321PQ8N8H1 164 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 POGLUT1Q8NBL1 392 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 FAM98AQ8NCA5 519 aaKnown RBP13.28□□□□□ -0.28
CPSF1-201ENST00000526271 NAP1L3Q99457 506 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-201ENST00000526271 FAM129AQ9BZQ8 928 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 DEFB127Q9H1M4 99 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 CCDC68Q9H2F9 335 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 RHBGQ9H310 441 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 XAB2Q9HCS7 855 aaKnown RBP13.28□□□□□ -0.28
CPSF1-201ENST00000526271 PRDM9Q9NQV7 894 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 PNPLA3Q9NST1 481 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 SAMD15Q9P1V8 674 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 KLF13Q9Y2Y9 288 aaPredicted RBP13.28□□□□□ -0.28
CPSF1-201ENST00000526271 MPDZO75970 2070 aa13.28□□□□□ -0.28
CPSF1-201ENST00000526271 NSD1Q96L73 2696 aaPredicted RBP13.27□□□□□ -0.28
CPSF1-201ENST00000526271 TFECO14948 347 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-201ENST00000526271 MYO1DO94832 1006 aa13.27□□□□□ -0.29
CPSF1-201ENST00000526271 GLSO94925 669 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-201ENST00000526271 HOXD4P09016 255 aaPredicted RBP13.27□□□□□ -0.29
CPSF1-201ENST00000526271 CELA3AP09093 270 aa13.27□□□□□ -0.29
CPSF1-201ENST00000526271 DNAJA1P31689 397 aaKnown RBP13.27□□□□□ -0.29
CPSF1-201ENST00000526271 HNRNPH1P31943 449 aaKnown RBP13.27□□□□□ -0.29
CPSF1-201ENST00000526271 ADH7P40394 386 aa13.27□□□□□ -0.29
CPSF1-201ENST00000526271 ART1P52961 327 aa13.27□□□□□ -0.29
CPSF1-201ENST00000526271 IST1P53990 364 aa13.27□□□□□ -0.29
CPSF1-201ENST00000526271 RNASEH2BQ5TBB1 312 aaKnown RBP13.27□□□□□ -0.29
CPSF1-201ENST00000526271 LMNTD2Q8IXW0 634 aa13.27□□□□□ -0.29
CPSF1-201ENST00000526271 CYP4Z2PQ8N1L4 340 aa13.27□□□□□ -0.29
CPSF1-201ENST00000526271 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms