RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SCN1BQ07699 218 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF311Q5JNZ3 666 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 ATG9BQ674R7 924 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 PIWIL3Q7Z3Z3 882 aaKnown RBP11.27□□□□□ -0.61
SYNPO-204ENST00000519664 HMGB4Q8WW32 186 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 FAM129BQ96TA1 746 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 ITPAQ9BY32 194 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 PRDM8Q9NQV8 689 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 POFUT2Q9Y2G5 429 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 PCDHGA3Q9Y5H0 932 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 NUMBLQ9Y6R0 609 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 M0R129 80 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 CAPN15O75808 1086 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 HOXD9P28356 352 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-204ENST00000519664 SGSHP51688 502 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 STXBP1P61764 594 aaKnown RBP11.27□□□□□ -0.61
SYNPO-204ENST00000519664 NCS1P62166 190 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 ARF5P84085 180 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 CATSPEREQ5SY80 951 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 HSDL2Q6YN16 418 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 MFSD6LQ8IWD5 586 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 LINC01465Q8N7H1 131 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 IPCEF1Q8WWN9 437 aaPredicted RBP11.27□□□□□ -0.61
SYNPO-204ENST00000519664 SLC39A13Q96H72 371 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 FUNDC2Q9BWH2 189 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 TIGARQ9NQ88 270 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 RNF6Q9Y252 685 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 BCORQ6W2J9 1755 aa11.27□□□□□ -0.61
SYNPO-204ENST00000519664 SLC25A12O75746 678 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 FCER2P06734 321 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 RPS17P08708 135 aaKnown RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 ARNTP27540 789 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF140P52738 457 aaPredicted RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 RCAN2Q14206 197 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 SELPLGQ14242 412 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 PLEKHS1Q5SXH7 462 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 SLC8B1Q6J4K2 584 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 CNTN4Q8IWV2 1026 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 LRRC20Q8TCA0 184 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 HDAC2Q92769 488 aaKnown RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 DNAJA3Q96EY1 480 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 CLSTN3Q9BQT9 956 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 KCNK12Q9HB15 430 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 TAS2R9Q9NYW1 312 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 HCN4Q9Y3Q4 1203 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 RPL36Q9Y3U8 105 aaKnown RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 TPRP12270 2363 aaKnown RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 CSF2P04141 144 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 ALPPP05187 535 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 HLCSP50747 726 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 TRIM71Q2Q1W2 868 aaKnown RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 IDNKQ5T6J7 187 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 OTUD1Q5VV17 481 aaPredicted RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 HACD2Q6Y1H2 254 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 ASB18Q6ZVZ8 466 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 CELF5Q8N6W0 485 aaKnown RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 SIPA1Q96FS4 1042 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 P2RX2Q9UBL9 471 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 MARF1Q9Y4F3 1742 aaKnown RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 A8MUA0 341 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 PLOD2O00469 737 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 BTN3A3O00478 584 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 OR12D1P0DN82 309 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 JUPP14923 745 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 TYRP1P17643 537 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 DCTP40126 519 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 REEP3Q6NUK4 255 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 FAM220AQ7Z4H9 259 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 DTX3Q8N9I9 347 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 FOXJ1Q92949 421 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 RIPOR3Q96MK2 946 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 C1QTNF1Q9BXJ1 281 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 SEZ6LQ9BYH1 1024 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 RBCK1Q9BYM8 510 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 UCK2Q9BZX2 261 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 C12orf4Q9NQ89 552 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 STON1Q9Y6Q2 735 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 N4BP2Q86UW6 1770 aaPredicted RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 DRGXA6NNA5 263 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 I6L893 689 aaPredicted RBP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 MPZL2O60487 215 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 C1GALT1C1LP0DN25 315 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 GGT1P19440 569 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 TACR1P25103 407 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 TIA1P31483 386 aaKnown RBP eCLIP11.26□□□□□ -0.61
SYNPO-204ENST00000519664 DEFB103AP81534 67 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 NPRL3Q12980 569 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 GRIK2Q13002 908 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 GRIN2CQ14957 1233 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 EXOC3L2Q2M3D2 409 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 ZNF404Q494X3 552 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 ARL9Q6T311 187 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 TMEM207Q6UWW9 146 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 FRRS1Q6ZNA5 592 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 USP43Q70EL4 1123 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 NAGSQ8N159 534 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 LRRC17Q8N6Y2 441 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 OR4C6Q8NH72 309 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 KLHL6Q8WZ60 621 aa11.26□□□□□ -0.61
SYNPO-204ENST00000519664 LGALS12Q96DT0 336 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms