RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TIGD1Q96MW7 591 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 TNFRSF13CQ96RJ3 184 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 MCCC1Q96RQ3 725 aaPredicted RBP1.79□□□□□ -2.12
NUP54-208ENST00000508604 PAXXQ9BUH6 204 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 TEX12Q9BXU0 123 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 CHCHD3Q9NX63 227 aaKnown RBP1.79□□□□□ -2.12
NUP54-208ENST00000508604 ODF2LQ9ULJ1 636 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 RNF150Q9ULK6 438 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 ISY1Q9ULR0 285 aaKnown RBP1.79□□□□□ -2.12
NUP54-208ENST00000508604 GPR34Q9UPC5 381 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 ANKRD18BA2A2Z9 1011 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 IGLON5A6NGN9 336 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 KIF5CO60282 957 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 ZBED4O75132 1171 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 HSP90AB1P08238 724 aaKnown RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 HSPA5P11021 654 aaKnown RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 MYL6BP14649 208 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 MDKP21741 143 aaPredicted RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 GCH1P30793 250 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 PRKAR2BP31323 418 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 CASP2P42575 452 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 TRPC1P48995 793 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 GTF2A1P52655 376 aaPredicted RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 CREB5Q02930 508 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 IFT88Q13099 833 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 KIAA0040Q15053 153 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 DUSP28Q4G0W2 176 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 FILIP1LQ4L180 1135 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 C9orf129Q5T035 196 aaKnown RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 LIPJQ5W064 366 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 ITPRIPL1Q6GPH6 555 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 C4orf50Q6ZRC1 276 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 OTUD6AQ7L8S5 288 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 SZRD1Q7Z422 152 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 CPEB2Q7Z5Q1 589 aaKnown RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 UBQLNLQ8IYU4 475 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 ZBED6CLQ96FA7 236 aaPredicted RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 LURAP1Q96LR2 239 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 ALKBH3Q96Q83 286 aaPredicted RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 PLSCR3Q9NRY6 295 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 EXOC1Q9NV70 894 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 UTP6Q9NYH9 597 aaKnown RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 CGNQ9P2M7 1197 aaKnown RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 ZNF346Q9UL40 294 aaKnown RBP1.78□□□□□ -2.12
NUP54-208ENST00000508604 ABCG2Q9UNQ0 655 aa1.78□□□□□ -2.12
NUP54-208ENST00000508604 TEX48A0A1B0GUV7 120 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 A0A1W2PQ09 198 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 PINLYPA6NC86 204 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 H0YHG0 523 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 PDXKO00764 312 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 LRRTM2O43300 516 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 TIMM44O43615 452 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 STAM2O75886 525 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 ACTL6AO96019 429 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 DNTTP04053 509 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 HCKP08631 526 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 CCDC175P0C221 793 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 NR2C1P13056 603 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 PORP16435 677 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 ACTN2P35609 894 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 TNNT3P45378 269 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 GABPB1Q06547 395 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 TMED1Q13445 227 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 TOMM20Q15388 145 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 REP15Q6BDI9 236 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 CCDC91Q7Z6B0 441 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 C5orf24Q7Z6I8 188 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 IQCF2Q8IXL9 164 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 MINDY1Q8N5J2 469 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 FAM184AQ8NB25 1140 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 CFAP61Q8NHU2 1237 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 RNF138Q8WVD3 245 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 RSPH1Q8WYR4 309 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 FRAT1Q92837 279 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 SYAP1Q96A49 352 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 PTERQ96BW5 349 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 NSUN4Q96CB9 384 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 RMDN2Q96LZ7 410 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 RANBP9Q96S59 729 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 LZTS2Q9BRK4 669 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 SDF4Q9BRK5 362 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 SCRT1Q9BWW7 348 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 MRPL1Q9BYD6 325 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 RIMS4Q9H426 269 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 PRMT7Q9NVM4 692 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 HAUS2Q9NVX0 235 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 NRBP1Q9UHY1 535 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 ZNF215Q9UL58 517 aaPredicted RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 hCG_1807616A0A1W2PRN6 198 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 ZNF487B1APH4 448 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 SIGLEC5O15389 551 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 HTATSF1O43719 755 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 ATP6AP2O75787 350 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 CCDC159P0C7I6 412 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 F3P13726 295 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 FEN1P39748 380 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 MDH2P40926 338 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 ADARP55265 1226 aaKnown RBP1.77□□□□□ -2.13
NUP54-208ENST00000508604 MC1RQ01726 317 aa1.77□□□□□ -2.13
NUP54-208ENST00000508604 MECOMQ03112 1051 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms