RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SPANXN4Q5MJ08 99 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 OTUD3Q5T2D3 398 aaPredicted RBP3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 GFI1BQ5VTD9 330 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZER1Q7Z7L7 766 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 CATSPERDQ86XM0 798 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 ELMOD1Q8N336 334 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 WDSUB1Q8N9V3 476 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 CLEC1AQ8NC01 280 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 NUP37Q8NFH4 326 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 OR13C5Q8NGS8 318 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF519Q8TB69 540 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 CD99L2Q8TCZ2 262 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 RNASE8Q8TDE3 154 aaKnown RBP3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF300Q96RE9 604 aaPredicted RBP3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 CCM2Q9BSQ5 444 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 PAPOLGQ9BWT3 736 aaKnown RBP3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZDHHC6Q9H6R6 413 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 DBNDD1Q9H9R9 158 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 C3orf14Q9HBI5 128 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 BARHL2Q9NY43 387 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 ETV7Q9Y603 341 aa3.48□□□□□ -1.85
HMGB1P28-201ENST00000507778 IQCMA0A1B0GVH7 501 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 GLTPD2A6NH11 291 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 LMO7DNF2Z398 122 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 NPIPB9F8W1W9 429 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 SYT7O43581 403 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZG16O60844 167 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 LRCH4O75427 683 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 OLFM2O95897 454 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 RPLP0P05388 317 aaKnown RBP3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 GSTA2P09210 222 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ODC1P11926 461 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 SKILP12757 684 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ACKR3P25106 362 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 MT3P25713 68 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 GJB2P29033 226 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ATP6V1E1P36543 226 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 DHODHQ02127 395 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 CBX3Q13185 183 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 GPR50Q13585 617 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 HFEQ30201 348 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 PLPP4Q5VZY2 271 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ADAM5Q6NVV9 412 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ALKBH5Q6P6C2 394 aaKnown RBP3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 CD164L2Q6UWJ8 174 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 Q6ZVQ6 151 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 CYP4V2Q6ZWL3 525 aaPredicted RBP3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 CNTN4Q8IWV2 1026 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 SLC43A2Q8N370 569 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF614Q8N883 585 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 RPLP0P6Q8NHW5 317 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 SPATA18Q8TC71 538 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 GANCQ8TET4 914 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 SMPDL3AQ92484 453 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 NR4A3Q92570 626 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZNF274Q96GC6 653 aaPredicted RBP3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 GUCD1Q96NT3 240 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 GAL3ST4Q96RP7 486 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ATP6V0BQ99437 205 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 TRIM7Q9C029 511 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 TSPYL1Q9H0U9 437 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 B3GAT2Q9NPZ5 323 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 ZDHHC18Q9NUE0 388 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 KCNK6Q9Y257 313 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 FOXA2Q9Y261 457 aaPredicted RBP3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 EXOC6BQ9Y2D4 811 aa3.47□□□□□ -1.85
HMGB1P28-201ENST00000507778 IGLV7-46A0A075B6I9 117 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 SERINC4A6NH21 518 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 RNF103O00237 685 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 CHUKO15111 745 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 SIGLEC5O15389 551 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 PSMD3O43242 534 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 DUS4LO95620 317 aaKnown RBP3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 THEGLP0DJG4 465 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 FERP16591 822 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 GPR183P32249 361 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 GABPAQ06546 454 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 SPHARQ15513 63 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 FAM189A2Q15884 450 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 LYPLAL1Q5VWZ2 237 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 SNRNP48Q6IEG0 339 aaKnown RBP3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 PLBD1Q6P4A8 553 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 TMEM64Q6YI46 380 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 KIF6Q6ZMV9 814 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 FRRS1Q6ZNA5 592 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 TOM1L2Q6ZVM7 507 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 SERPINA12Q8IW75 414 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 DND1Q8IYX4 353 aaKnown RBP3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 HAS2Q92819 552 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 EEF2KMTQ96G04 330 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 DDX50Q9BQ39 737 aaKnown RBP3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 OVOL2Q9BRP0 275 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 WWTR1Q9GZV5 400 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 VPS33BQ9H267 617 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 CYP39A1Q9NYL5 469 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 HMG20BQ9P0W2 317 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 ZNF319Q9P2F9 582 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 PSORS1C1Q9UIG5 152 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 PILRAQ9UKJ1 303 aa3.46□□□□□ -1.86
HMGB1P28-201ENST00000507778 ERVK-19Q9WJR5 959 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms