RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 HSF1Q00613 529 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 REEP5Q00765 189 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 SLC13A2Q13183 592 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 TTC27Q6P3X3 843 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 C3P1Q6ZMU1 363 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 SLC22A16Q86VW1 577 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 SULF2Q8IWU5 870 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 PDIK1LQ8N165 341 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 CREB3L4Q8TEY5 395 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 ASB15Q8WXK1 588 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 GAL3ST3Q96A11 431 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 PDLIM5Q96HC4 596 aaKnown RBP19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 VPS39Q96JC1 886 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 TSNARE1Q96NA8 513 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 ZNF559Q9BR84 538 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 SLC6A16Q9GZN6 736 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 PITHD1Q9GZP4 211 aaPredicted RBP19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 COPS7BQ9H9Q2 264 aaPredicted RBP19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 ZFATQ9P243 1243 aa19.65■□□□□ 0.74
SQSTM1-210ENST00000506042 TEP1Q99973 2627 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 FIGNL2A6NMB9 653 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 C19orf84I3L1E1 186 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 B3GALT2O43825 422 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 PTGER1P34995 402 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 TOR1AIP1Q5JTV8 583 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 CATSPEREQ5SY80 951 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 NXPE4Q6UWF7 544 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 GK5Q6ZS86 529 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 CEP128Q6ZU80 1094 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 THOC6Q86W42 341 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 ZFP62Q8NB50 900 aaPredicted RBP19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 CCT6BQ92526 530 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 DAZLQ92904 295 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 ADAP2Q9NPF8 381 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 PRTFDC1Q9NRG1 225 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 PNO1Q9NRX1 252 aaKnown RBP19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 CLCA3PQ9Y6N3 262 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 SPACA6W5XKT8 324 aa19.64■□□□□ 0.73
SQSTM1-210ENST00000506042 GTF3C1Q12789 2109 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 IGKV3D-11A0A0A0MRZ8 115 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 A8MUA0 341 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 BCKDKO14874 412 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 HS6ST1O60243 411 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 AHSGP02765 367 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 F7P08709 466 aaPredicted RBP19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 CDKN2DP55273 166 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 BTG2P78543 158 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 CDKL1Q00532 357 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 NDUFAF5Q5TEU4 345 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 ZNF468Q5VIY5 522 aaPredicted RBP19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 TRIM40Q6P9F5 258 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 ADAMTSL2Q86TH1 951 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 ZNF595Q8IYB9 648 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 OR5M3Q8NGP4 307 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 LILRB4Q8NHJ6 448 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 LRRC39Q96DD0 335 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 CNOT10Q9H9A5 744 aaKnown RBP19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 CACNA1CQ13936 2221 aa19.63■□□□□ 0.73
SQSTM1-210ENST00000506042 OR14I1A6ND48 311 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 ANKDD1BA6NHY2 528 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 DYRK3O43781 588 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 PEX19P40855 299 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 ST13P50502 369 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 SLC12A2P55011 1212 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 SNRPNP63162 240 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 BTN3A2P78410 334 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 BMPR2Q13873 1038 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 EFTUD2Q15029 972 aaKnown RBP eCLIP19.62■□□□□ 0.731e-6■■■■□ 21.8
SQSTM1-210ENST00000506042 RBM20Q5T481 1227 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 TMEM200AQ86VY9 491 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 PSD4Q8NDX1 1056 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 NFAM1Q8NET5 270 aaPredicted RBP19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 LRRC46Q96FV0 321 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 PDLIM2Q96JY6 352 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 OR4K3Q96R72 315 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 ROGDIQ9GZN7 287 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 NSMCE4AQ9NXX6 385 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 KCNN3Q9UGI6 736 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 OTOGQ6ZRI0 2925 aa19.62■□□□□ 0.73
SQSTM1-210ENST00000506042 IFNA16P05015 189 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 RAB38P57729 211 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 TBL3Q12788 808 aaKnown RBP19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 MYBPHQ13203 477 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 ELAVL1Q15717 326 aaKnown RBP19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 RNASEH2BQ5TBB1 312 aaKnown RBP19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 TMIGD1Q6UXZ0 262 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 CA13Q8N1Q1 262 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 TCAIMQ8N3R3 496 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 APCDD1LQ8NCL9 501 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 SRFBP1Q8NEF9 429 aaKnown RBP19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 OR5L2Q8NGL0 311 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 KIAA1191Q96A73 305 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 NECTIN3Q9NQS3 549 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 RYDENQ9NUL5 291 aaKnown RBP19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 SLC22A14Q9Y267 594 aa19.61■□□□□ 0.73
SQSTM1-210ENST00000506042 DNALI1O14645 258 aaPredicted RBP19.6■□□□□ 0.73
SQSTM1-210ENST00000506042 ERI3O43414 337 aaKnown RBP19.6■□□□□ 0.73
SQSTM1-210ENST00000506042 ZWINTO95229 277 aa19.6■□□□□ 0.73
SQSTM1-210ENST00000506042 STX4Q12846 297 aa19.6■□□□□ 0.73
SQSTM1-210ENST00000506042 CMPK2Q5EBM0 449 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms