RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 HRH2P25021 359 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 TACR1P25103 407 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 CETN2P41208 172 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 CLCN2P51788 898 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 MEF2AQ02078 507 aaPredicted RBP15.3■□□□□ 0.04
VIM-208ENST00000497849 RIPPLY2Q5TAB7 128 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 SEL1L2Q5TEA6 688 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 SHEQ5VZ18 495 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 CAPN13Q6MZZ7 669 aaPredicted RBP15.3■□□□□ 0.04
VIM-208ENST00000497849 SYT10Q6XYQ8 523 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 C16orf47Q6ZP98 133 aaPredicted RBP15.3■□□□□ 0.04
VIM-208ENST00000497849 SLC22A16Q86VW1 577 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 ZNF740Q8NDX6 193 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 PPHLN1Q8NEY8 458 aaKnown RBP15.3■□□□□ 0.04
VIM-208ENST00000497849 SLC30A3Q99726 388 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 NECTIN3Q9NQS3 549 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 FBXW2Q9UKT8 454 aa15.3■□□□□ 0.04
VIM-208ENST00000497849 AQP7O14520 342 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 PRKNO60260 465 aaPredicted RBP15.29■□□□□ 0.04
VIM-208ENST00000497849 CELA3AP09093 270 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 ARNTP27540 789 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 SKIV2L2P42285 1042 aaKnown RBP15.29■□□□□ 0.04
VIM-208ENST00000497849 MAGEA5P43359 124 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 SSR4P51571 173 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 ETF1P62495 437 aaKnown RBP15.29■□□□□ 0.04
VIM-208ENST00000497849 HYAL2Q12891 473 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 HERC3Q15034 1050 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 PCBP2Q15366 365 aaKnown RBP eCLIP15.29■□□□□ 0.04
VIM-208ENST00000497849 DEFB134Q4QY38 66 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 PCID2Q5JVF3 399 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 SEM1Q6ZVN7 128 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 SLC13A5Q86YT5 568 aaPredicted RBP15.29■□□□□ 0.04
VIM-208ENST00000497849 TMEM251Q8N6I4 163 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 B3GNT7Q8NFL0 401 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 ASB11Q8WXH4 323 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 RNASE6Q93091 150 aaKnown RBP15.29■□□□□ 0.04
VIM-208ENST00000497849 OSBPL9Q96SU4 736 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 BEX4Q9NWD9 120 aaPredicted RBP15.29■□□□□ 0.04
VIM-208ENST00000497849 ACAD8Q9UKU7 415 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 ERVK-11Q9UQG0 969 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 CRYL1Q9Y2S2 319 aa15.29■□□□□ 0.04
VIM-208ENST00000497849 ANK3Q12955 4377 aaKnown RBP15.29■□□□□ 0.04
VIM-208ENST00000497849 INAFM1C9JVW0 142 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 G3V3Y1 287 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 H3BMM5 538 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 GFYI3L273 518 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 ESR1P03372 595 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 SLC35G6P0C7Q6 338 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 NMBRP28336 390 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 CLCN7P51798 805 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 GPR143P51810 404 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 TBPL1P62380 186 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 CRADDP78560 199 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 KLF1Q13351 362 aaPredicted RBP15.28■□□□□ 0.04
VIM-208ENST00000497849 FBXL19-AS1Q494R0 122 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 XKR6Q5GH73 641 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 NDUFAF5Q5TEU4 345 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 FBXW10Q5XX13 1052 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 CXorf67Q86X51 503 aaPredicted RBP15.28■□□□□ 0.04
VIM-208ENST00000497849 FAM109AQ8N4B1 249 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 MFSD9Q8NBP5 474 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 NAXEQ8NCW5 288 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 GIMAP7Q8NHV1 300 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 NAPGQ99747 312 aaPredicted RBP15.28■□□□□ 0.04
VIM-208ENST00000497849 FAM129AQ9BZQ8 928 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 LIN28AQ9H9Z2 209 aaKnown RBP15.28■□□□□ 0.04
VIM-208ENST00000497849 CCDC177Q9NQR7 707 aaPredicted RBP15.28■□□□□ 0.04
VIM-208ENST00000497849 ALKBH4Q9NXW9 302 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 SNX12Q9UMY4 172 aa15.28■□□□□ 0.04
VIM-208ENST00000497849 DRG1Q9Y295 367 aaKnown RBP15.28■□□□□ 0.04
VIM-208ENST00000497849 YARS2Q9Y2Z4 477 aaKnown RBP15.28■□□□□ 0.04
VIM-208ENST00000497849 NCKAP5O14513 1909 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 A0A1W2PPR1 153 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 CTAGE9A4FU28 777 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 A8MVJ9 347 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 FAM47E-STBD1D6RA91 191 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 GOLGA8KD6RF30 607 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 GOLGA8TH3BQL2 631 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 H7C1Q1 480 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 SUSD5O60279 629 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 OR6B1O95007 311 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 EPXP11678 715 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 ALOX12P18054 663 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 ENDOUP21128 410 aaKnown RBP15.27■□□□□ 0.04
VIM-208ENST00000497849 CASQ1P31415 396 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 ASCL1P50553 236 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 ADARP55265 1226 aaKnown RBP15.27■□□□□ 0.04
VIM-208ENST00000497849 KCTD19Q17RG1 926 aaPredicted RBP15.27■□□□□ 0.04
VIM-208ENST00000497849 POMZP3Q6PJE2 187 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 IL20RBQ6UXL0 311 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 CYHR1Q6ZMK1 362 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 OTUD6BQ8N6M0 293 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 C1orf54Q8WWF1 131 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 ATG4AQ8WYN0 398 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 PBKQ96KB5 322 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 PRDM9Q9NQV7 894 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 HPF1Q9NWY4 346 aa15.27■□□□□ 0.04
VIM-208ENST00000497849 PPIEQ9UNP9 301 aaKnown RBP15.27■□□□□ 0.04
VIM-208ENST00000497849 E7EVH7 732 aa15.26■□□□□ 0.03
VIM-208ENST00000497849 OR2J2O76002 312 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms