RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 SHISA9B4DS77 424 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 LUC7L3O95232 432 aaKnown RBP4.52□□□□□ -1.69
SF3B1-212ENST00000496458 SLC4A1P02730 911 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 ZNF41P51814 821 aaPredicted RBP4.52□□□□□ -1.69
SF3B1-212ENST00000496458 CLDN17P56750 224 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 EVCP57679 992 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 HIGD2BQ4VC39 106 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 GALNT17Q6IS24 598 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 IYDQ6PHW0 289 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 DCLRE1AQ6PJP8 1040 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 SLC25A42Q86VD7 318 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 HPS6Q86YV9 775 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 CCDC170Q8IYT3 715 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 P2RX5Q93086 422 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 NXPE2Q96DL1 559 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 RBM41Q96IZ5 413 aaKnown RBP4.52□□□□□ -1.69
SF3B1-212ENST00000496458 FBXL4Q9UKA2 621 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 POMT2Q9UKY4 750 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 MTF2Q9Y483 593 aaPredicted RBP4.52□□□□□ -1.69
SF3B1-212ENST00000496458 CCL27Q9Y4X3 112 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 SAMD9Q5K651 1589 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 TSPOAP1O95153 1857 aa4.52□□□□□ -1.69
SF3B1-212ENST00000496458 ABCC2Q92887 1545 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 UHRF1BP1LA0JNW5 1464 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 IGLV4-3A0A075B6K6 122 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 IGHV3-20A0A0C4DH32 117 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 A8MVM7 634 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 H3BMM5 538 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 FMO6PO60774 539 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 PENKP01210 267 aaPredicted RBP4.51□□□□□ -1.69
SF3B1-212ENST00000496458 RPLP0P05388 317 aaKnown RBP4.51□□□□□ -1.69
SF3B1-212ENST00000496458 YES1P07947 543 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 FOLR2P14207 255 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 TCF4P15884 667 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 SELEP16581 610 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 CDC25CP30307 473 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 RGS7P49802 495 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 NDST2P52849 883 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 HYAL4Q2M3T9 481 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 LBHQ53QV2 105 aaPredicted RBP4.51□□□□□ -1.69
SF3B1-212ENST00000496458 CHST3Q7LGC8 479 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 NRARPQ7Z6K4 114 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 THNSL1Q8IYQ7 743 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 SLC22A15Q8IZD6 547 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 CCAR2Q8N163 923 aaKnown RBP4.51□□□□□ -1.69
SF3B1-212ENST00000496458 OTUD6BQ8N6M0 293 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 TMCO5AQ8N6Q1 288 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 Q8NFD4 153 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 TAF4BQ92750 862 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 TOMM40LQ969M1 308 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 GDAP1L1Q96MZ0 367 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 PRR34Q9NV39 138 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 HPF1Q9NWY4 346 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 GTSE1Q9NYZ3 720 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 POLKQ9UBT6 870 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 HEG1Q9ULI3 1381 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 KIF13AQ9H1H9 1805 aa4.51□□□□□ -1.69
SF3B1-212ENST00000496458 ARHGAP35Q9NRY4 1499 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 ABCA8O94911 1581 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 CLIP1P30622 1438 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 IGKV6D-41A0A0C4DH26 115 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 IGHV3-38A0A0C4DH36 116 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 MAGEB2O15479 319 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 BCL2L11O43521 198 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 SLU7O95391 586 aaKnown RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 CCDC175P0C221 793 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 HLA-DPA1P20036 260 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 EDNRAP25101 427 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 TCF7P36402 384 aaPredicted RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 FKBP3Q00688 224 aaKnown RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 IL1RL1Q01638 556 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 SULT2A1Q06520 285 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 KIAA0141Q14154 515 aaPredicted RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 ZNF146Q15072 292 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 PPA1Q15181 289 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 TAF7Q15545 349 aaPredicted RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 LRRC73Q5JTD7 316 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 FUT10Q6P4F1 479 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 MOXD1Q6UVY6 613 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 GLRX5Q86SX6 157 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 RNF130Q86XS8 419 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 FBXL16Q8N461 479 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 SPC24Q8NBT2 197 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 DEPDC1BQ8WUY9 529 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 NSMAFQ92636 917 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 ANP32BQ92688 251 aaKnown RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 PTP4A1Q93096 173 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 ATF6BQ99941 703 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 CHMP4BQ9H444 224 aaKnown RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 SLC12A6Q9UHW9 1150 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 PLCL2Q9UPR0 1127 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 RRP15Q9Y3B9 282 aaKnown RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 STYXL1Q9Y6J8 313 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 EFCAB5A4FU69 1503 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 KDM5BQ9UGL1 1544 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 ZCCHC11Q5TAX3 1644 aaKnown RBP4.5□□□□□ -1.69
SF3B1-212ENST00000496458 RAPGEF6Q8TEU7 1601 aa4.5□□□□□ -1.69
SF3B1-212ENST00000496458 NEDD4P46934 1319 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 hCG_38984A0A1B0GV85 526 aa4.49□□□□□ -1.69
SF3B1-212ENST00000496458 CCDC69A6NI79 296 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms