RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	PLLP	Q9Y342	182 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	PLXND1	Q9Y4D7	1925 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	SPAG17	Q6Q759	2223 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919		F5H423	210 aa	Predicted RBP	11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	KCNK3	O14649	394 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	RGS16	O15492	202 aa	Predicted RBP	11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	INSIG1	O15503	277 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	GJB3	O75712	270 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	PEX11B	O96011	259 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	GDF10	P55107	478 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	ITK	Q08881	620 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	NUMA1	Q14980	2115 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	SGO1	Q5FBB7	561 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	BBS12	Q6ZW61	710 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	ERMP1	Q7Z2K6	904 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	ZNF438	Q7Z4V0	828 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	SDK1	Q7Z5N4	2213 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	LIX1L	Q8IVB5	337 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	NUDCD3	Q8IVD9	361 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	TMEFF1	Q8IYR6	380 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	RNF113B	Q8IZP6	322 aa	Known RBP	11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	TRAM1L1	Q8N609	369 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	CLRN3	Q8NCR9	226 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	OR6F1	Q8NGZ6	308 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	TNFRSF14	Q92956	283 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	EXOSC8	Q96B26	276 aa	Known RBP	11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	DUS3L	Q96G46	650 aa	Known RBP	11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	ZNF419	Q96HQ0	510 aa	Predicted RBP	11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	PPP1R16A	Q96I34	528 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	LRFN5	Q96NI6	719 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	SERPINI1	Q99574	410 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	GPR174	Q9BXC1	333 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	LDAH	Q9H6V9	325 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	ITM2C	Q9NQX7	267 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	DLGAP4	Q9Y2H0	992 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	NDUFAF1	Q9Y375	327 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	PCDHGB1	Q9Y5G3	927 aa		11.15	□□□□□ -0.62
BRCA1-222	ENST00000493919	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	TTC24	A2A3L6	582 aa	Predicted RBP	11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	BCLAF3	A2AJT9	711 aa	Known RBP	11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	AHRR	A9YTQ3	701 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ALG1L2	C9J202	215 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	APOC4-APOC2	K7ER74	178 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	GIPC1	O14908	333 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZNF185	O15231	689 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	MATN3	O15232	486 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	GPR37	O15354	613 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZNF780A	O75290	641 aa	Predicted RBP	11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	APOC2	P02655	101 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	TNNI3	P19429	210 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	LAP3	P28838	519 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	PTPN7	P35236	360 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	DRD3	P35462	400 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	CNTN1	Q12860	1018 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ZNF267	Q14586	743 aa	Predicted RBP	11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	INPP5A	Q14642	412 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	PGS1	Q32NB8	556 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	PLK5	Q496M5	336 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ATAD3C	Q5T2N8	411 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	AGAP6	Q5VW22	663 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	MLIP	Q5VWP3	458 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	KLHL24	Q6TFL4	600 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ADGRG3	Q86Y34	549 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ENTHD1	Q8IYW4	607 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	OR14C36	Q8NHC7	312 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	AKR7L	Q8NHP1	331 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ADAMTS18	Q8TE60	1221 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	DNAJA4	Q8WW22	397 aa	Predicted RBP	11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ARRDC3	Q96B67	414 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	AGAP4	Q96P64	663 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	CDC6	Q99741	560 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	HINFP	Q9BQA5	517 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	SF3B5	Q9BWJ5	86 aa	Known RBP	11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	NEUROG2	Q9H2A3	272 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	GAREM1	Q9H706	876 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	CCM2L	Q9NUG4	571 aa	Predicted RBP	11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	SH3BP4	Q9P0V3	963 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	SIRPG	Q9P1W8	387 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	COPG2	Q9UBF2	871 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	KL	Q9UEF7	1012 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ST14	Q9Y5Y6	855 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	THADA	Q6YHU6	1953 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	GPR179	Q6PRD1	2367 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ABCA7	Q8IZY2	2146 aa		11.14	□□□□□ -0.63
BRCA1-222	ENST00000493919	ANKRD36	A6QL64	1941 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919		A0A1B0GV90	55 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919		I3L521	148 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	DNAJA2	O60884	412 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	VPS4B	O75351	444 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	PGLS	O95336	258 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	SEMA4F	O95754	770 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	PKM	P14618	531 aa	Known RBP	11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	POU1F1	P28069	291 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	PIK3CG	P48736	1102 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	GRIK2	Q13002	908 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	LRRC73	Q5JTD7	316 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	AGBL4	Q5VU57	503 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	PMS2CL	Q68D20	193 aa		11.13	□□□□□ -0.63
BRCA1-222	ENST00000493919	SLC30A6	Q6NXT4	461 aa		11.13	□□□□□ -0.63

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