RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 VWA7Q9Y334 891 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 DYRK1BQ9Y463 629 aa11.58□□□□□ -0.56
CPSF3-204ENST00000489403 TRBV11-1A0A0K0K1C0 115 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 GOLGA6L10A0A0M3HER8 536 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 A0A1B0GTH9 108 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 HS6ST1O60243 411 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 MYO1DO94832 1006 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 SERPINA6P08185 405 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 ZNF37AP17032 561 aaPredicted RBP11.57□□□□□ -0.56
CPSF3-204ENST00000489403 PTGS2P35354 604 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 CLCN2P51788 898 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 RIPPLY3P57055 190 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 CMPK2Q5EBM0 449 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 HP1BP3Q5SSJ5 553 aaPredicted RBP11.57□□□□□ -0.56
CPSF3-204ENST00000489403 CD163Q86VB7 1156 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 SCUBE1Q8IWY4 988 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.57□□□□□ -0.56
CPSF3-204ENST00000489403 EID3Q8N140 333 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 CYP4Z2PQ8N1L4 340 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 MARVELD2Q8N4S9 558 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 B3GNT7Q8NFL0 401 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 C16orf52Q8NHV5 167 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 FAM57AQ8TBR7 257 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 CA5BP1Q8WTZ4 195 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 SDCCAG3Q96C92 435 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 PDLIM5Q96HC4 596 aaKnown RBP11.57□□□□□ -0.56
CPSF3-204ENST00000489403 PWWP2AQ96N64 755 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 SPOCK3Q9BQ16 436 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 CHMP2BQ9UQN3 213 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 MMACHCQ9Y4U1 282 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 HRH3Q9Y5N1 445 aa11.57□□□□□ -0.56
CPSF3-204ENST00000489403 NPEPPSL1A6NEC2 478 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 KLRC4-KLRK1H3BQV0 150 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 CDC7O00311 574 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 PEX1O43933 1283 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 CDC40O60508 579 aaKnown RBP eCLIP11.56□□□□□ -0.56
CPSF3-204ENST00000489403 ITGA10O75578 1167 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 TPOP07202 933 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 TFEBP19484 476 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 IVDP26440 423 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 PPP2R1BP30154 601 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 ELK3P41970 407 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 HNRNPFP52597 415 aaKnown RBP11.56□□□□□ -0.56
CPSF3-204ENST00000489403 GPR85P60893 370 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 BTN3A2P78410 334 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 TLE4Q04727 773 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 RUNX2Q13950 521 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 ZNF460Q14592 562 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 MDGA2Q7Z553 956 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 SLC35F6Q8N357 371 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 ZFP62Q8NB50 900 aaPredicted RBP11.56□□□□□ -0.56
CPSF3-204ENST00000489403 ARMC2Q8NEN0 867 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 CHTF18Q8WVB6 975 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 SLCO2A1Q92959 643 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 GAL3ST3Q96A11 431 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 CFAP36Q96G28 342 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 TREX2Q9BQ50 279 aaPredicted RBP11.56□□□□□ -0.56
CPSF3-204ENST00000489403 DDX47Q9H0S4 455 aaKnown RBP11.56□□□□□ -0.56
CPSF3-204ENST00000489403 COQ3Q9NZJ6 369 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 FBXW2Q9UKT8 454 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 PPIEQ9UNP9 301 aaKnown RBP11.56□□□□□ -0.56
CPSF3-204ENST00000489403 CLDN16Q9Y5I7 305 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 KCNE2Q9Y6J6 123 aa11.56□□□□□ -0.56
CPSF3-204ENST00000489403 A0A0G2JN53 185 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 TGFBR3LH3BV60 316 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 PRKNO60260 465 aaPredicted RBP11.55□□□□□ -0.56
CPSF3-204ENST00000489403 CAPN3P20807 821 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 SAT1P21673 171 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 HNRNPH1P31943 449 aaKnown RBP11.55□□□□□ -0.56
CPSF3-204ENST00000489403 NR0B1P51843 470 aaKnown RBP11.55□□□□□ -0.56
CPSF3-204ENST00000489403 RAB38P57729 211 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 STXBP1P61764 594 aaKnown RBP11.55□□□□□ -0.56
CPSF3-204ENST00000489403 CDKL1Q00532 357 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 TERF2Q15554 542 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 TESK1Q15569 626 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 C18orf21Q32NC0 220 aaPredicted RBP11.55□□□□□ -0.56
CPSF3-204ENST00000489403 STEAP4Q687X5 459 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 MEX3BQ6ZN04 569 aaKnown RBP11.55□□□□□ -0.56
CPSF3-204ENST00000489403 CEP128Q6ZU80 1094 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 TMEM156Q8N614 296 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 TMEM52Q8NDY8 209 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 OR52N2Q8NGI0 321 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 NCLNQ969V3 563 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 VMP1Q96GC9 406 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 EGFL8Q99944 293 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 PNO1Q9NRX1 252 aaKnown RBP11.55□□□□□ -0.56
CPSF3-204ENST00000489403 PLSCR2Q9NRY7 297 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 OARD1Q9Y530 152 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 PSAT1Q9Y617 370 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 TEX264Q9Y6I9 313 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 F8P00451 2351 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 HCFC1P51610 2035 aa11.55□□□□□ -0.56
CPSF3-204ENST00000489403 FAM95CA0A1B0GW59 222 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 TMEM200CA6NKL6 621 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 CES2O00748 559 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 ERI3O43414 337 aaKnown RBP11.54□□□□□ -0.56
CPSF3-204ENST00000489403 PDE9AO76083 593 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 WDR47O94967 919 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 C1GALT1C1LP0DN25 315 aa11.54□□□□□ -0.56
CPSF3-204ENST00000489403 IGFBP2P18065 325 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms