RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 LOC102723532A0A0G2JNH3 316 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 PCDH8O95206 1070 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 HOXB6P17509 224 aaKnown RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 EPHB3P54753 998 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 SPATS1Q496A3 300 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 CAPN13Q6MZZ7 669 aaPredicted RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 MTSS1LQ765P7 747 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 LAX1Q8IWV1 398 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 CNTN4Q8IWV2 1026 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 SAMD12Q8N8I0 201 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 ZNF548Q8NEK5 533 aaPredicted RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 OR52L1Q8NGH7 329 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 POP5Q969H6 163 aaKnown RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 TMEM80Q96HE8 168 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 ABCD2Q9UBJ2 740 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 SEC14L4Q9UDX3 406 aa13.02□□□□□ -0.32
USP42-206ENST00000479544 ZFR2Q9UPR6 939 aaKnown RBP13.02□□□□□ -0.32
USP42-206ENST00000479544 CD8B2A6NJW9 211 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 EEF1E1O43324 174 aaKnown RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 SNAI1O95863 264 aaPredicted RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 H1F0P07305 194 aaKnown RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 CD8BP10966 210 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 MTHFD2P13995 350 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 RNF144AP50876 292 aaPredicted RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 RGS8P57771 180 aaPredicted RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 PPP2R2BQ00005 443 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 BTG3Q14201 252 aaPredicted RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 BCL2L15Q5TBC7 163 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 GDPD3Q7L5L3 318 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 FAM20CQ8IXL6 584 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 FAM46DQ8NEK8 389 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 OR7G1Q8NGA0 311 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 HMGCLL1Q8TB92 370 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 GEMIN6Q8WXD5 167 aaKnown RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 DOHHQ9BU89 302 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 PDCD10Q9BUL8 212 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 ZCCHC3Q9NUD5 404 aaKnown RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 TAS2R7Q9NYW3 318 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 ZNF282Q9UDV7 671 aaPredicted RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 CFAP20Q9Y6A4 193 aaKnown RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 UBE2QL1A1L167 161 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 GNB5O14775 395 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 URODP06132 367 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 CYP2A6P11509 494 aaPredicted RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 SSTR2P30874 369 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 EIF2DP41214 584 aaKnown RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 RGRP47804 291 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 CCR4P51679 360 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 POLR2LP62875 67 aaKnown RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 SLBPQ14493 270 aaKnown RBP eCLIP13.02□□□□□ -0.33
USP42-206ENST00000479544 POU4F3Q15319 338 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 TMEM179BQ7Z7N9 219 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 SLC43A3Q8NBI5 491 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 TNFAIP8L1Q8WVP5 186 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 CTRCQ99895 268 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 TRMT61BQ9BVS5 477 aaKnown RBP13.02□□□□□ -0.33
USP42-206ENST00000479544 ANKHQ9HCJ1 492 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 PFDN2Q9UHV9 154 aa13.02□□□□□ -0.33
USP42-206ENST00000479544 GLOD5A6NK44 160 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 PCDHGA12O60330 932 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 NTSP30990 170 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 SLC6A4P31645 630 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 CSKP41240 450 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 CDKN2CP42773 168 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 FNTBP49356 437 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 DPY19L1Q2PZI1 675 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 LRIT3Q3SXY7 679 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 YIPF7Q8N8F6 280 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 LMNTD1Q8N9Z9 388 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 BEST4Q8NFU0 473 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 GGHQ92820 318 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 ISL2Q96A47 359 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 COQ8BQ96D53 544 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 TMEM248Q9NWD8 314 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 SCN7AQ01118 1682 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 SPNP16150 400 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 LINGO2Q7L985 606 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 NEIL3Q8TAT5 605 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 USP7Q93009 1102 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 MND1Q9BWT6 205 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 CXXC1Q9P0U4 656 aaPredicted RBP13.01□□□□□ -0.33
USP42-206ENST00000479544 FAM155AB1AL88 458 aaPredicted RBP13.01□□□□□ -0.33
USP42-206ENST00000479544 ALAS2P22557 587 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 ERP29P30040 261 aaKnown RBP13.01□□□□□ -0.33
USP42-206ENST00000479544 RPL4P36578 427 aaKnown RBP13.01□□□□□ -0.33
USP42-206ENST00000479544 BDKRB1P46663 353 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 DSTNP60981 165 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 ELAVL2Q12926 359 aaKnown RBP13.01□□□□□ -0.33
USP42-206ENST00000479544 CCDC58Q4VC31 144 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 ZNF467Q7Z7K2 595 aaPredicted RBP13.01□□□□□ -0.33
USP42-206ENST00000479544 ZNF655Q8N720 491 aaPredicted RBP13.01□□□□□ -0.33
USP42-206ENST00000479544 NPLOC4Q8TAT6 608 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 LRR1Q96L50 414 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 RNF121Q9H920 327 aa13.01□□□□□ -0.33
USP42-206ENST00000479544 ALPK2Q86TB3 2170 aa13□□□□□ -0.33
USP42-206ENST00000479544 FAM227AF5H4B4 570 aa13□□□□□ -0.33
USP42-206ENST00000479544 I6L893 689 aaPredicted RBP13□□□□□ -0.33
USP42-206ENST00000479544 J3KTA2 159 aa13□□□□□ -0.33
USP42-206ENST00000479544 RETP07949 1114 aa13□□□□□ -0.33
USP42-206ENST00000479544 ATF6P18850 670 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms