RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 UBQLN3Q9H347 655 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 EGLN3Q9H6Z9 239 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 GPN1Q9HCN4 374 aaPredicted RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 IL1RAPL2Q9NP60 686 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 B3GAT2Q9NPZ5 323 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 IARS2Q9NSE4 1012 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 MAN2C1Q9NTJ4 1040 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 DNAJC17Q9NVM6 304 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 TMEM161AQ9NX61 479 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 IL36AQ9UHA7 158 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 NOCTQ9UK39 431 aaKnown RBP2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 FBXL5Q9UKA1 691 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 PRDM4Q9UKN5 801 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 AGTPBP1Q9UPW5 1226 aa2.5□□□□□ -2.01
CCDC88A-212ENST00000474059 ACEP12821 1306 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 MYH15Q9Y2K3 1946 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 A0A0B4J203 849 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 TRBV4-1A0A0J9YWV2 114 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 MTMR11A4FU01 709 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 TRIM49BA6NDI0 452 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 E5RGE8 158 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 TFECO14948 347 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 TEX28O15482 410 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 ACSL4O60488 711 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 KRT33AO76009 404 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 IGHEP01854 428 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 VTNP04004 478 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 YES1P07947 543 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 THEGLP0DJG4 465 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 GOT1P17174 413 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 OXTRP30559 389 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 SNU13P55769 128 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 STX1BP61266 288 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 TRIM29Q14134 588 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 MORF4L2Q15014 288 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 PTPN14Q15678 1187 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF74Q16587 644 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 ODF2Q5BJF6 829 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF542PQ5EBM4 170 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF789Q5FWF6 425 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 KHDRBS2Q5VWX1 349 aaKnown RBP2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 KLHL10Q6JEL2 608 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 TMEM270Q6UE05 265 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 LEKR1Q6ZMV7 388 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 SLC24A5Q71RS6 500 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 C5orf24Q7Z6I8 188 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 PRUNE1Q86TP1 453 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 CCDC83Q8IWF9 413 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 UNC45BQ8IWX7 931 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 AQP12AQ8IXF9 295 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 GPC2Q8N158 579 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 GPD1LQ8N335 351 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 PRSS35Q8N3Z0 413 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 FAM89BQ8N5H3 189 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 AQP11Q8NBQ7 271 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 OR4C15Q8NGM1 316 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 SAP25Q8TEE9 199 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 CKAP2Q8WWK9 683 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 NXPE2Q96DL1 559 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 TSSK2Q96PF2 358 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 LGMNQ99538 433 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 ZNF577Q9BSK1 485 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 ALKBH7Q9BT30 221 aaPredicted RBP2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 CACNG6Q9BXT2 260 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 NYXQ9GZU5 481 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 C5orf66Q9H5L9 145 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 ANAPC11Q9NYG5 84 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 NSG2Q9Y328 171 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 PCDHGA1Q9Y5H4 931 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 CSNK1G3Q9Y6M4 447 aa2.49□□□□□ -2.01
CCDC88A-212ENST00000474059 KIAA1217Q5T5P2 1943 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 LOC105371242A0A075B767 164 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 A0A087WUV0 522 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 A0A0A6YYC8 382 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 SMIM30A4D0T7 59 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 ANKDD1BA6NHY2 528 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 H0YIG0 161 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 I3L1I5 382 aaPredicted RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 TTI1O43156 1089 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 KIF5CO60282 957 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 CRCPO75575 148 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 GLCEO94923 617 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 KRT6AP02538 564 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 KRT6BP04259 564 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 C8orf89P0DMQ9 161 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 UROSP10746 265 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 VDRP11473 427 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 ATP6V1B1P15313 513 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 RPL35AP18077 110 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 ELAVL4P26378 380 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 SERPINB6P35237 376 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 MAGEB1P43366 347 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 IER3P46695 156 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 KRT6CP48668 564 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 ADARP55265 1226 aaKnown RBP2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 NME5P56597 212 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 CLDN17P56750 224 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 OR1D5P58170 312 aa2.48□□□□□ -2.01
CCDC88A-212ENST00000474059 CSNK2BP67870 215 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms