RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CA13Q8N1Q1 262 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 KIF2BQ8N4N8 673 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 TTLQ8NG68 377 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 NR4A3Q92570 626 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 GAL3ST3Q96A11 431 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 FAR2Q96K12 515 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 NPAS2Q99743 824 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 PHACTR1Q9C0D0 580 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 CNOT10Q9H9A5 744 aaKnown RBP14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 PRM3Q9NNZ6 103 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 GPRC5BQ9NZH0 403 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 RNF112Q9ULX5 631 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 CSMD1Q96PZ7 3565 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 ABCA12Q86UK0 2595 aa14.75□□□□□ -0.05
CCDC88B-205ENST00000472524 ESYT3A0FGR9 886 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 A8MUA0 341 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 ERI3O43414 337 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 CCNT2O60583 730 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 STK16O75716 305 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 STSP08842 583 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 MYBL2P10244 700 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 HNRNPH1P31943 449 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 TDGF1P3P51864 188 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 PER3P56645 1201 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 TAS2R50P59544 299 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 TUBA3CQ13748 450 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 XKR6Q5GH73 641 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 ZNF324BQ6AW86 544 aaPredicted RBP14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 SULT1C3Q6IMI6 304 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 TUBA3EQ6PEY2 450 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 FJX1Q86VR8 437 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 SLC5A8Q8N695 610 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 PDPRQ8NCN5 879 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 MARVELD3Q96A59 401 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 KIAA1191Q96A73 305 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 UTP23Q9BRU9 249 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 CAPS2Q9BXY5 557 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 ALG9Q9H6U8 611 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 CLK4Q9HAZ1 481 aaKnown RBP14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 NECTIN3Q9NQS3 549 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 PRDM9Q9NQV7 894 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 KLHL1Q9NR64 748 aa14.74□□□□□ -0.05
CCDC88B-205ENST00000472524 EML6Q6ZMW3 1958 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 ANKDD1BA6NHY2 528 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 GABRR3A8MPY1 467 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 SUPT3HB4E1H0 165 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 PRAMEF4O60810 478 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 SUPT3HO75486 399 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 TFEBP19484 476 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 GGT5P36269 586 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 PLA2G16P53816 162 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 OC90Q02509 493 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 CKAP4Q07065 602 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 PDK4Q16654 411 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 CDKL4Q5MAI5 379 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 PRAMEF9Q5VWM5 478 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 ADNP2Q6IQ32 1131 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 C8orf74Q6P047 294 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 GFRALQ6UXV0 394 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 ZNF572Q7Z3I7 529 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 TBC1D1Q86TI0 1168 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 SLC34A3Q8N130 599 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 ARMC2Q8NEN0 867 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 MS4A6EQ96DS6 147 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 MRRFQ96E11 262 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 UBXN10Q96LJ8 280 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 SIGLEC12Q96PQ1 595 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 HES7Q9BYE0 225 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 CDCP1Q9H5V8 836 aa14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 PTBP2Q9UKA9 531 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-205ENST00000472524 TCRBV16S1A1N1A0A5B0 115 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 LRIT2A6NDA9 550 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 SAGE2PA6NJ88 616 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 CLEC3AO75596 197 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 CRYABP02511 175 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 SLC35E2BP0CK96 405 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 MST1P26927 711 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 GSTM2P28161 218 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 CD96P40200 585 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 DLG1Q12959 904 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 RUNX2Q13950 521 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 DOC2AQ14183 400 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 OR1C1Q15619 314 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 SPINK14Q6IE38 97 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 TRIM40Q6P9F5 258 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 VN1R5Q7Z5H4 357 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 FAM47BQ8NA70 645 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 MDS2Q8NDY4 140 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 ELP5Q8TE02 316 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 PTCD3Q96EY7 689 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 C16orf45Q96MC5 204 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 PITHD1Q9GZP4 211 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 REXO4Q9GZR2 422 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 EHD1Q9H4M9 534 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 NT5DC2Q9H857 520 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 NUDT4Q9NZJ9 180 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 COPG2Q9UBF2 871 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 ENTPD4Q9Y227 616 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 ASB1Q9Y576 335 aa14.72□□□□□ -0.05
CCDC88B-205ENST00000472524 A0A088AWK7 358 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms