RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 MIEF2Q96C03 454 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 CRELD1Q96HD1 420 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 KCNC2Q96PR1 638 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SH3GL2Q99962 352 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 CENPKQ9BS16 269 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SLC29A3Q9BZD2 475 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 TGIF2Q9GZN2 237 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 PRORYQ9H606 182 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 SOX17Q9H6I2 414 aaPredicted RBP11.31□□□□□ -0.6
VPS13D-204ENST00000469054 PRDM7Q9NQW5 492 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 HCN3Q9P1Z3 774 aa11.31□□□□□ -0.6
VPS13D-204ENST00000469054 WDR91A4D1P6 747 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 SAP18O00422 153 aaKnown RBP11.3□□□□□ -0.6
VPS13D-204ENST00000469054 BIRC5O15392 142 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 CHST10O43529 356 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 DNAJB6O75190 326 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 ULK1O75385 1050 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 BMP10O95393 424 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 KRT6AP02538 564 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 KRT6BP04259 564 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 PRKAR1AP10644 381 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 IL10P22301 178 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 HMOX2P30519 316 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 FOLR3P41439 243 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 KRT6CP48668 564 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 ARFIP1P53367 373 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 MTTPP55157 894 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 OLR1P78380 273 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 GALNT1Q10472 559 aaPredicted RBP11.3□□□□□ -0.6
VPS13D-204ENST00000469054 CDC20Q12834 499 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 CUL3Q13618 768 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 UGT8Q16880 541 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 COL28A1Q2UY09 1125 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 TCHHL1Q5QJ38 904 aaPredicted RBP11.3□□□□□ -0.6
VPS13D-204ENST00000469054 SHISA6Q6ZSJ9 500 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 ZCCHC23Q6ZST2 131 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 UBE3DQ7Z6J8 389 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 LAPTM4BQ86VI4 370 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 TMEM151BQ8IW70 566 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 ZC3H7AQ8IWR0 971 aaKnown RBP11.3□□□□□ -0.6
VPS13D-204ENST00000469054 SHISA5Q8N114 240 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 GOLGA6L1Q8N7Z2 621 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 ANKRD42Q8N9B4 389 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 OR6Y1Q8NGX8 325 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 RGMAQ96B86 450 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 ATP6V1G3Q96LB4 118 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 QRFPRQ96P65 431 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 SERINC2Q96SA4 455 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 SERPINI1Q99574 410 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 TBCDQ9BTW9 1192 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 NPLQ9BXD5 320 aaPredicted RBP11.3□□□□□ -0.6
VPS13D-204ENST00000469054 ROGDIQ9GZN7 287 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 FARSBQ9NSD9 589 aaKnown RBP11.3□□□□□ -0.6
VPS13D-204ENST00000469054 C14orf105Q9NVL8 296 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 TIMM22Q9Y584 194 aa11.3□□□□□ -0.6
VPS13D-204ENST00000469054 MDC1Q14676 2089 aaKnown RBP11.29□□□□□ -0.6
VPS13D-204ENST00000469054 CDC14CA4D256 554 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 RTCAO00442 366 aaKnown RBP11.29□□□□□ -0.6
VPS13D-204ENST00000469054 MANBAO00462 879 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 B3GALT2O43825 422 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 JRKO75564 520 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 SEMA3DO95025 777 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 ETHE1O95571 254 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 PDYNP01213 254 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 UMODP07911 640 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 FURINP09958 794 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 MMP11P24347 488 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 ATP5A1P25705 553 aaKnown RBP11.29□□□□□ -0.6
VPS13D-204ENST00000469054 SERPINB5P36952 375 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 XCR1P46094 333 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 RAP1GDS1P52306 607 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 FOXA1P55317 472 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 WDR4P57081 412 aaKnown RBP11.29□□□□□ -0.6
VPS13D-204ENST00000469054 ZNF33BQ06732 778 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 KLC1Q07866 573 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 IL10RAQ13651 578 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 RUNX2Q13950 521 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 RCN2Q14257 317 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 AP5B1Q2VPB7 878 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 TTMPQ5BVD1 217 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 ARL13AQ5H913 290 aaPredicted RBP11.29□□□□□ -0.6
VPS13D-204ENST00000469054 ATP1A1-AS1Q5TC04 95 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 HHATQ5VTY9 493 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 FAM219BQ5XKK7 198 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 OR4C11Q6IEV9 310 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 ZNF793Q6ZN11 406 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 GPR155Q7Z3F1 870 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 CUZD1Q86UP6 607 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 PRSS58Q8IYP2 241 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 CA13Q8N1Q1 262 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 PPP1R14CQ8TAE6 165 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 ADAMTS17Q8TE56 1095 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 THAP4Q8WY91 577 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 NACC2Q96BF6 587 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 TBC1D20Q96BZ9 403 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 PEX11GQ96HA9 241 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 CATSPER2Q96P56 530 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 OR1F2PQ96R84 312 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 KCNA7Q96RP8 456 aa11.29□□□□□ -0.6
VPS13D-204ENST00000469054 PAIP2Q9BPZ3 127 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms