RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CREB3L4Q8TEY5 395 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 CDCA4Q9BXL8 241 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF556Q9HAH1 456 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 RABL2AQ9UBK7 228 aaPredicted RBP11.24□□□□□ -0.61
CPSF3-202ENST00000460593 POFUT2Q9Y2G5 429 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 AP3M1Q9Y2T2 418 aa11.24□□□□□ -0.61
CPSF3-202ENST00000460593 ZFP37Q9Y6Q3 630 aaPredicted RBP11.24□□□□□ -0.61
CPSF3-202ENST00000460593 FAM240BA0A1B0GVZ2 78 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 MBLAC1A4D2B0 266 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 C2orf78A6NCI8 922 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 PCP4L1A6NKN8 68 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF670-ZNF695F2Z2N8 137 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 ADAMDEC1O15204 470 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 FABP7O15540 132 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 C1QBP02746 253 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 POLR2CP19387 275 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 CSTF2P33240 577 aaKnown RBP eCLIP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 HKDC1Q2TB90 917 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 GPR156Q8NFN8 814 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 OR4C15Q8NGM1 316 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 QRFPRQ96P65 431 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 WACQ9BTA9 647 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 ASB8Q9H765 288 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 CLN6Q9NWW5 311 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 TXNL4BQ9NX01 149 aaKnown RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 TRPS1Q9UHF7 1281 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 IGLV3-10A0A075B6K4 115 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 PRAMEF33A0A0G2JMD5 474 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 TMEM88BA6NKF7 163 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 HPGDSO60760 199 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 PRAMEF10O60809 474 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 TSPAN9O75954 239 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 MYCP01106 439 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 PDGFAP04085 211 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 SLC2A2P11168 524 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 AMD1P17707 334 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 TACR2P21452 398 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 SSTR2P30874 369 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 SLC9A3P48764 834 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 CRYBB1P53674 252 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 CDC42P60953 191 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 EIF4HQ15056 248 aaKnown RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 OR2G6Q5TZ20 316 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 FRMPD2BQ6IN97 320 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 SHFQ7M4L6 423 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 MEX3DQ86XN8 651 aaKnown RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 PLCZ1Q86YW0 608 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 Q8N402 240 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 DNAJC5GQ8N7S2 189 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 SLC37A3Q8NCC5 494 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 NFKBIDQ8NI38 313 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 PKP4Q99569 1192 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 NTMT1Q9BV86 223 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 ACAT2Q9BWD1 397 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 MBD1Q9UIS9 605 aaPredicted RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 SLC22A14Q9Y267 594 aa11.23□□□□□ -0.61
CPSF3-202ENST00000460593 LAMA2P24043 3122 aaKnown RBP11.23□□□□□ -0.61
CPSF3-202ENST00000460593 PTPRDP23468 1912 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ISM1B1AKI9 464 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 B4GALT3O60512 393 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TNNI3P19429 210 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 CLCN4P51793 760 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SMSP52788 366 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TNK1Q13470 666 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 LCN1P1Q5VSP4 162 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TRIQKQ629K1 86 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 PHC2Q8IXK0 858 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 C19orf18Q8NEA5 215 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 MAGEB10Q96LZ2 347 aaPredicted RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TRIM62Q9BVG3 475 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 C1QTNF7Q9BXJ2 289 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SH3BP4Q9P0V3 963 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TMCC3Q9ULS5 477 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SCML1Q9UN30 329 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SSR3Q9UNL2 185 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 NOD1Q9Y239 953 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 LSM2Q9Y333 95 aaKnown RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 C1SP09871 688 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF30P17039 623 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 RGS4P49798 205 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 AGFG1P52594 562 aaKnown RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 RPS25P62851 125 aaKnown RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 MGAT3Q09327 533 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 IL18Q14116 193 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 RGNQ15493 299 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 CNIH2Q6PI25 160 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 XKRXQ6PP77 449 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ANKS3Q6ZW76 656 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 MON1AQ86VX9 555 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 OR52P1PQ8NH57 321 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TESCQ96BS2 214 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 C1GALT1C1Q96EU7 318 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 SLC6A18Q96N87 628 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 DCLRE1CQ96SD1 692 aaKnown RBP11.22□□□□□ -0.61
CPSF3-202ENST00000460593 C17orf62Q9BQA9 187 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 TM6SF2Q9BZW4 377 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 RACGAP1Q9H0H5 632 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ING3Q9NXR8 418 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 ZNF224Q9NZL3 707 aa11.22□□□□□ -0.61
CPSF3-202ENST00000460593 STUB1Q9UNE7 303 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms