RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 SOCS6O14544 535 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 ERI3O43414 337 aaKnown RBP18.83■□□□□ 0.6
COL9A3-202ENST00000452372 CHST10O43529 356 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 DNAJB6O75190 326 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 ERLIN1O75477 346 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 HEXBP07686 556 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 PIK3CBP42338 1070 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 CDH13P55290 713 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 BTN3A2P78410 334 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 FOXK1P85037 733 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 ZNF844Q08AG5 666 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 TRAF3Q13114 568 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 RBBP7Q16576 425 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 CPSF6Q16630 551 aaKnown RBP eCLIP18.83■□□□□ 0.6
COL9A3-202ENST00000452372 CPZQ66K79 652 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 TRIM40Q6P9F5 258 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 KIRREL2Q6UWL6 708 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 CHSY3Q70JA7 882 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 RPS27LQ71UM5 84 aaKnown RBP18.83■□□□□ 0.6
COL9A3-202ENST00000452372 MILR1Q7Z6M3 343 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 SRFBP1Q8NEF9 429 aaKnown RBP18.83■□□□□ 0.6
COL9A3-202ENST00000452372 HUS1BQ8NHY5 278 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 CCDC126Q96EE4 140 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 L3HYPDHQ96EM0 354 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 CMTM7Q96FZ5 175 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 FER1L6-AS2Q96M78 137 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 CDK15Q96Q40 435 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 F2RL3Q96RI0 385 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 TRIM55Q9BYV6 548 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 MKS1Q9NXB0 559 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 MKL2Q9ULH7 1088 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 SCN2AQ99250 2005 aa18.83■□□□□ 0.6
COL9A3-202ENST00000452372 NUP210LQ5VU65 1888 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 CCDC151A5D8V7 595 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 PCDH17O14917 1159 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 JRKO75564 520 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 SUPT7LO94864 414 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 OTCP00480 354 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 CYC1P08574 325 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 MYL2P10916 166 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 ARL1P40616 181 aaPredicted RBP18.82■□□□□ 0.6
COL9A3-202ENST00000452372 OLR1P78380 273 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 CLCQ05315 142 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 TGM3Q08188 693 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 ZRSR2Q15696 482 aaKnown RBP18.82■□□□□ 0.6
COL9A3-202ENST00000452372 KRT71Q3SY84 523 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 GGTA1PQ4G0N0 100 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 TMEM35AQ53FP2 167 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 LACTB2Q53H82 288 aaPredicted RBP18.82■□□□□ 0.6
COL9A3-202ENST00000452372 TCTN3Q6NUS6 607 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 ABHD17CQ6PCB6 329 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 ZYG11AQ6WRX3 759 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 SRRM1Q8IYB3 904 aaKnown RBP18.82■□□□□ 0.6
COL9A3-202ENST00000452372 BANPQ8N9N5 519 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 RDH11Q8TC12 318 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 PPP4R1Q8TF05 950 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 PEX11GQ96HA9 241 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 VPS50Q96JG6 964 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 MAGEB10Q96LZ2 347 aaPredicted RBP18.82■□□□□ 0.6
COL9A3-202ENST00000452372 QRFPRQ96P65 431 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 TMEM237Q96Q45 408 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 OR1F2PQ96R84 312 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 NPLQ9BXD5 320 aaPredicted RBP18.82■□□□□ 0.6
COL9A3-202ENST00000452372 ACSS2Q9NR19 701 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 PSD3Q9NYI0 1048 aa18.82■□□□□ 0.6
COL9A3-202ENST00000452372 A0A088AWK7 358 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 A0A0G2JN53 185 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 PPP6CO00743 305 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 TGFB1P01137 390 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 PDGFAP04085 211 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 ZNF10P21506 573 aaPredicted RBP18.81■□□□□ 0.6
COL9A3-202ENST00000452372 PLA2G16P53816 162 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 CHAF1BQ13112 559 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 DDX39BQ13838 428 aaKnown RBP18.81■□□□□ 0.6
COL9A3-202ENST00000452372 DCAF10Q5QP82 559 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 DEPDC1Q5TB30 811 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 OR4F6Q8NGB9 312 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 OR11G2Q8NGC1 345 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 WDR20Q8TBZ3 569 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 TRPC4APQ8TEL6 797 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 TBC1D20Q96BZ9 403 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 APOPT1Q96IL0 206 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 MTERF1Q99551 399 aaKnown RBP18.81■□□□□ 0.6
COL9A3-202ENST00000452372 VN1R1Q9GZP7 353 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 C12orf65Q9H3J6 166 aaKnown RBP18.81■□□□□ 0.6
COL9A3-202ENST00000452372 PRM3Q9NNZ6 103 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 DMRT3Q9NQL9 472 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 PRDM7Q9NQW5 492 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 PLLPQ9Y342 182 aa18.81■□□□□ 0.6
COL9A3-202ENST00000452372 USP9YO00507 2555 aaPredicted RBP18.81■□□□□ 0.6
COL9A3-202ENST00000452372 A0A1B0GTL3 188 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 FOXE1O00358 373 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-202ENST00000452372 ALOX12BO75342 701 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 DNAJB5O75953 348 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 FHP07954 510 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 TSPAN8P19075 237 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 PTX3P26022 381 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-202ENST00000452372 CCL11P51671 97 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 EFNA3P52797 238 aa18.8■□□□□ 0.6
COL9A3-202ENST00000452372 PHEXP78562 749 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms