RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CXorf56Q9H5V9 222 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 WDR45Q9Y484 360 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ENTPD2Q9Y5L3 495 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 MYOCOSA0A1B0GUC4 107 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 C1orf105O95561 183 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 MMP2P08253 660 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 IL1RNP18510 177 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 FOXA1P55317 472 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 BNC1Q01954 994 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 TRAF3Q13114 568 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 WSCD2Q2TBF2 565 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 FAM91A1Q658Y4 838 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 METTL2BQ6P1Q9 378 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 LCTLQ6UWM7 567 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 IQCHQ86VS3 1027 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 OR10H5Q8NGA6 315 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF483Q8TF39 744 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 APIPQ96GX9 242 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PDLIM5Q96HC4 596 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ZFYVE21Q9BQ24 234 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 FARSBQ9NSD9 589 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 GIN1Q9NXP7 522 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ACTR10Q9NZ32 417 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PTGFRNQ9P2B2 879 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 YBX2Q9Y2T7 364 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ELOA3DA6NLF2 546 aaPredicted RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 TCF3P15923 654 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 CKMT2P17540 419 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 FBLP22087 321 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 RPL5P46777 297 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 DCDC1P59894 354 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 CSNK2BP67870 215 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ELOA3BQ3SY89 546 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 LILRA6Q6PI73 481 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 BLOC1S3Q6QNY0 202 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 TTLL10Q6ZVT0 673 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 COMMD6Q7Z4G1 85 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 MCEMP1Q8IX19 187 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ELOA3Q8NG57 546 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 OR10G2Q8NGC3 310 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 SMPDL3BQ92485 455 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 BIRC7Q96CA5 298 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PYURFQ96I23 114 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF354BQ96LW1 612 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 RPF2Q9H7B2 306 aaKnown RBP7.11□□□□□ -1.27
SYNE1-213ENST00000448038 PDFQ9HBH1 243 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 IL1RAPQ9NPH3 570 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 C11orf16Q9NQ32 467 aa7.11□□□□□ -1.27
SYNE1-213ENST00000448038 CAPN14A8MX76 684 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 EI24O14681 340 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 STX11O75558 287 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ANGPTL1O95841 491 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 DRD2P14416 443 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ALOX12P18054 663 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ITGB8P26012 769 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 PRDX3P30048 256 aaKnown RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 DGUOKQ16854 277 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 REEP3Q6NUK4 255 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ADIPOR2Q86V24 386 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 GRHL3Q8TE85 626 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 MOAP1Q96BY2 351 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 TRIM8Q9BZR9 551 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 POLR2J3Q9H1A7 115 aaKnown RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 MKKSQ9NPJ1 570 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 IRGMA1A4Y4 181 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 H7C0S8 307 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 TBX10O75333 385 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 CCDC159P0C7I6 412 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ANXA8P13928 327 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 CASRP41180 1078 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 AQP4P55087 323 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 YPEL5P62699 121 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 RHDQ02161 417 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 GRM7Q14831 915 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ARHGAP19Q14CB8 494 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 SPATS1Q496A3 300 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 AFMIDQ63HM1 303 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 OR2T5Q6IEZ7 315 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 SMARCD3Q6STE5 483 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 OR8J3Q8NGG0 315 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 OR5M3Q8NGP4 307 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 OR2T29Q8NH02 315 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF480Q8WV37 535 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 RNF31Q96EP0 1072 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 VN1R3Q9BXE9 311 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ANKMY1Q9P2S6 941 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 RARRES3Q9UL19 164 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 C17orf113A0A1B0GUU1 675 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 PCDHGA12O60330 932 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 BCAS2O75934 225 aaPredicted RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 H1F0P07305 194 aaKnown RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 AHCYP23526 432 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 ACADLP28330 430 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 DNAJA1P31689 397 aaKnown RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 LSM3P62310 102 aaKnown RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 PPP1R8Q12972 351 aaKnown RBP7.1□□□□□ -1.27
SYNE1-213ENST00000448038 GPR153Q6NV75 609 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 RABEPKQ7Z6M1 372 aa7.1□□□□□ -1.27
SYNE1-213ENST00000448038 OR8H2Q8N162 312 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms