RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PHF21AQ96BD5 680 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 SNRNP40Q96DI7 357 aaKnown RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 DHTKD1Q96HY7 919 aaPredicted RBP3.86□□□□□ -1.79
VPS29-202ENST00000447578 RUFY1Q96T51 708 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 PRRG4Q9BZD6 226 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 CUEDC2Q9H467 287 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 MAGEF1Q9HAY2 307 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 Q9N2K0 584 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 SERINC1Q9NRX5 453 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 HPF1Q9NWY4 346 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 SLCO1C1Q9NYB5 712 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 TMCC3Q9ULS5 477 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 AMDHD2Q9Y303 409 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 ATP6V0A2Q9Y487 856 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 SCN5AQ14524 2016 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 LAMB1P07942 1786 aa3.86□□□□□ -1.79
VPS29-202ENST00000447578 CHD4Q14839 1912 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 IGKV6D-41A0A0C4DH26 115 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 DENND3A2RUS2 1198 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CTAGE9A4FU28 777 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 MAGEA13PA6NCF6 341 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 FLRT2O43155 660 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 TXNL1O43396 289 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 SLC37A4O43826 429 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 WISP2O76076 250 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CLDN14O95500 239 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 GSRP00390 522 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 C9P02748 559 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 H1F0P07305 194 aaKnown RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 MYOD1P15172 320 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 EPORP19235 508 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CCNE1P24864 410 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 HSPA1LP34931 641 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 GNL1P36915 607 aaPredicted RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 PPP1R2P41236 205 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 MTIF2P46199 727 aaKnown RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 NPBWR1P48145 328 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 KLK7P49862 253 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 SERPINH1P50454 418 aaKnown RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 MMP15P51511 669 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CASP9P55211 416 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 UCP2P55851 309 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 POLR2FP61218 127 aaKnown RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 DSC1Q08554 894 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 ORC2Q13416 577 aaPredicted RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 DHX34Q14147 1143 aaKnown RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 IFI44LQ53G44 452 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 XKR9Q5GH70 373 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 EFHC1Q5JVL4 640 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CDC42EP5Q6NZY7 148 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 FAM122CQ6P4D5 195 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 ZNF704Q6ZNC4 412 aaPredicted RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 CREB3L2Q70SY1 520 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 MIER3Q7Z3K6 550 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 NLRP14Q86W24 1093 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 PTOV1Q86YD1 416 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 SIAH3Q8IW03 269 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 LMNTD2Q8IXW0 634 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 SLC35F6Q8N357 371 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CLIP4Q8N3C7 705 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 PGBD5Q8N414 524 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 RYBPQ8N488 228 aaPredicted RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 CEP112Q8N8E3 955 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 RDM1Q8NG50 284 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 OR8K1Q8NGG5 319 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 RNF128Q8TEB7 428 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 TMED6Q8WW62 240 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 TANKQ92844 425 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 ABTB1Q969K4 478 aaPredicted RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 WBP1Q96G27 269 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CNOT6LQ96LI5 555 aaKnown RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 MTMR9Q96QG7 549 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 OR1F2PQ96R84 312 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CHP1Q99653 195 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 TUBGCP2Q9BSJ2 902 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 NUP58Q9BVL2 599 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 SLC2A11Q9BYW1 496 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 TRIM9Q9C026 710 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 TRIM7Q9C029 511 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 RNPEPL1Q9HAU8 725 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 ACKR4Q9NPB9 350 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 ZNF446Q9NWS9 450 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 C1RLQ9NZP8 487 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 LRWD1Q9UFC0 647 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 RPH3AQ9Y2J0 694 aaPredicted RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 TDRKHQ9Y2W6 561 aaKnown RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 STRAPQ9Y3F4 350 aaKnown RBP3.85□□□□□ -1.79
VPS29-202ENST00000447578 JRKLQ9Y4A0 524 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 PCDHAC2Q9Y5I4 1007 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 PLIN4Q96Q06 1357 aa3.85□□□□□ -1.79
VPS29-202ENST00000447578 CASZ1Q86V15 1759 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 BAZ2AQ9UIF9 1905 aaKnown RBP3.84□□□□□ -1.79
VPS29-202ENST00000447578 A0A1W2PPK0 400 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 TTC26A0AVF1 554 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 PLSCR5A0PG75 271 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 LINC01553A4QN01 128 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 LILRA5A6NI73 299 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 SLC9B1P1A6NJY1 282 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 PRR32B1ATL7 298 aa3.84□□□□□ -1.79
VPS29-202ENST00000447578 CACNB4O00305 520 aaPredicted RBP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms