RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ERAL1O75616 437 aaKnown RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 IGLV3-27P01718 113 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 APOA1P02647 267 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 MAD2L1Q13257 205 aaPredicted RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 PIN1Q13526 163 aaPredicted RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 COQ5Q5HYK3 327 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 SNAP47Q5SQN1 464 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 OR2G6Q5TZ20 316 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 ASTLQ6HA08 431 aaPredicted RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 TERB1Q8NA31 727 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TUBA1CQ9BQE3 449 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 EMILIN2Q9BXX0 1053 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 OR2AG1Q9H205 316 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 KCTD5Q9NXV2 234 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 NUFIP1Q9UHK0 495 aaKnown RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 WNT6Q9Y6F9 365 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TRBV4-1A0A0J9YWV2 114 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 OR6C75A6NL08 312 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 ADAMDEC1O15204 470 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TNFRSF21O75509 655 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 IGSF6O95976 241 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 GASTP01350 101 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 ADORA3P0DMS8 318 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 HOXB8P17481 243 aaPredicted RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 PTPN6P29350 595 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TGFBR2P37173 567 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 MESP2Q0VG99 397 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 SLBPQ14493 270 aaKnown RBP eCLIP8.3□□□□□ -1.08
USP40-203ENST00000427112 PRSS53Q2L4Q9 553 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 KDM4DQ6B0I6 523 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 DNAJA3Q96EY1 480 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TRMT61AQ96FX7 289 aaKnown RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 OR4K3Q96R72 315 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TM9SF2Q99805 663 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 CDADC1Q9BWV3 514 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 OSGEPL1Q9H4B0 414 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 NEK6Q9HC98 313 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 MIEF1Q9NQG6 463 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 STOX2Q9P2F5 926 aaPredicted RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 PCDHB1Q9Y5F3 818 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TRBC2A0A5B9 178 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 EFCAB10A6NFE3 127 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 M0R3H8 397 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 ZW10O43264 779 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 IDH3BO43837 385 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 ENTPD6O75354 484 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 HTR7P34969 479 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 NSG1P42857 185 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 RECQLP46063 649 aaPredicted RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 SLC16A1P53985 500 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 OR2B6P58173 313 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 SCARB2Q14108 478 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 PLEKHG6Q3KR16 790 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 FAM124AQ86V42 546 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 SFTPA1Q8IWL2 248 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 RHOXF1Q8NHV9 184 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 BBS10Q8TAM1 723 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TRMT61BQ9BVS5 477 aaKnown RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 MUC13Q9H3R2 512 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TM9SF3Q9HD45 589 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 TM7SF3Q9NS93 570 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 PAQR5Q9NXK6 330 aaPredicted RBP8.3□□□□□ -1.08
USP40-203ENST00000427112 NDUFAF4Q9P032 175 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 NOX1Q9Y5S8 564 aa8.3□□□□□ -1.08
USP40-203ENST00000427112 A0A1W2PPK0 400 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 A0A1W2PQ45 241 aaPredicted RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 A0A1W2PQY0 241 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 OR2A25A4D2G3 310 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 ZNF701M0R085 212 aaPredicted RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 TLX2O43763 284 aaPredicted RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 SGTAO43765 313 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 GUCY1B2O75343 617 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 LEFTY1O75610 366 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 GADD45GO95257 159 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 NAT2P11245 290 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SRCP12931 536 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 JUNBP17275 347 aaPredicted RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 EIF2DP41214 584 aaKnown RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 INPP1P49441 399 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 WNT3P56703 355 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 PFN3P60673 137 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SLAMF1Q13291 335 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 PTGES3Q15185 160 aaKnown RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 RGNQ15493 299 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 LRIT3Q3SXY7 679 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 C22orf42Q6IC83 251 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 TP53I13Q8NBR0 393 aaPredicted RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 OR2AP1Q8NGE2 309 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 STARD8Q92502 1023 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SLC38A4Q969I6 547 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 YIPF6Q96EC8 236 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 MGLLQ99685 303 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SUV39H2Q9H5I1 410 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 XKR8Q9H6D3 395 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SCN8AQ9UQD0 1980 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SOBPA7XYQ1 873 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 FAM220BPB1ANY3 271 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 C5orf58C9J3I9 102 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 PLD2O14939 933 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 UPK1BO75841 260 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms