RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 BCL6P41182 706 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 CSNK1G2P78368 415 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 OLR1P78380 273 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 TLE4Q04727 773 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 SFT2D3Q587I9 215 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 RBM20Q5T481 1227 aaKnown RBP12.12□□□□□ -0.47
LINC00339-202ENST00000416769 PAPD4Q6PIY7 484 aaKnown RBP12.12□□□□□ -0.47
LINC00339-202ENST00000416769 TIFABQ6ZNK6 161 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 DOLPP1Q86YN1 238 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 RIBC1Q8N443 379 aaPredicted RBP12.12□□□□□ -0.47
LINC00339-202ENST00000416769 RPRMLQ8N4K4 120 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 MARVELD2Q8N4S9 558 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 CPSF7Q8N684 471 aaKnown RBP12.12□□□□□ -0.47
LINC00339-202ENST00000416769 GPATCH11Q8N954 259 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 MAGEC3Q8TD91 643 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 THAP3Q8WTV1 239 aaPredicted RBP12.12□□□□□ -0.47
LINC00339-202ENST00000416769 METTL21AQ8WXB1 218 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 NRGNQ92686 78 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 MTBPQ96DY7 904 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 PEX11GQ96HA9 241 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 VIPAS39Q9H9C1 493 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 LANCL2Q9NS86 450 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 TAS2R13Q9NYV9 303 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 DHRS7Q9Y394 339 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 ASB1Q9Y576 335 aa12.12□□□□□ -0.47
LINC00339-202ENST00000416769 HCFC1P51610 2035 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 HMX2A2RU54 273 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 E5RI56 91 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 LCMT2O60294 686 aaKnown RBP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 NSA2O95478 260 aaKnown RBP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 AVPR1BP47901 424 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 SMSP52788 366 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 CASP6P55212 293 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 TBPL1P62380 186 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 TIAL1Q01085 375 aaKnown RBP eCLIP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 RHAGQ02094 409 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 OC90Q02509 493 aaPredicted RBP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 FAM53BQ14153 422 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 USP10Q14694 798 aaKnown RBP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 THEMIS2Q5TEJ8 643 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 MROH9Q5TGP6 573 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 TMEM214Q6NUQ4 689 aaKnown RBP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 MTFR2Q6P444 385 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 CYHR1Q6ZMK1 362 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 MEX3BQ6ZN04 569 aaKnown RBP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 CPNE9Q8IYJ1 553 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 ACBD4Q8NC06 268 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 EPS8L3Q8TE67 593 aaKnown RBP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 SDCCAG3Q96C92 435 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 TSPAN17Q96FV3 270 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 PKNOX2Q96KN3 472 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 ZNF354BQ96LW1 612 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 DMRTA2Q96SC8 542 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 NDNQ99608 321 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 UTP23Q9BRU9 249 aaKnown RBP12.11□□□□□ -0.47
LINC00339-202ENST00000416769 CDCP1Q9H5V8 836 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 POPDC3Q9HBV1 291 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 ADAMTS6Q9UKP5 1117 aa12.11□□□□□ -0.47
LINC00339-202ENST00000416769 H0YIG0 161 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ASNA1O43681 348 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 CATP04040 527 aaKnown RBP12.1□□□□□ -0.47
LINC00339-202ENST00000416769 SP1P08047 785 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ICAM2P13598 275 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ABOP16442 354 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 STMN1P16949 149 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 EEF1DP29692 281 aaKnown RBP12.1□□□□□ -0.47
LINC00339-202ENST00000416769 SSTR2P30874 369 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 SLCO1A2P46721 670 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 PGGT1BP53609 377 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 SLC12A2P55011 1212 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 CDKN2DP55273 166 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 SLC26A5P58743 744 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 TAS2R39P59534 338 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 MEF2AQ02078 507 aaPredicted RBP12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ZNF844Q08AG5 666 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ARHGAP19Q14CB8 494 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ABRAXAS2Q15018 415 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 MAPKAPK3Q16644 382 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 CEP85LQ5SZL2 805 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 CCDC91Q7Z6B0 441 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ASB11Q8WXH4 323 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ISL2Q96A47 359 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 ALKBH8Q96BT7 664 aaKnown RBP12.1□□□□□ -0.47
LINC00339-202ENST00000416769 GPR21Q99679 349 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 OLFM1Q99784 485 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 MMP25Q9NPA2 562 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 NPDC1Q9NQX5 325 aaPredicted RBP12.1□□□□□ -0.47
LINC00339-202ENST00000416769 TBK1Q9UHD2 729 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 LGALS13Q9UHV8 139 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 TEKT2Q9UIF3 430 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 NAALAD2Q9Y3Q0 740 aa12.1□□□□□ -0.47
LINC00339-202ENST00000416769 NKX2-6A6NCS4 301 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 SMIM23A6NLE4 172 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 TRIM49D1C9J1S8 452 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 EIF3FO00303 357 aaPredicted RBP12.09□□□□□ -0.47
LINC00339-202ENST00000416769 ATP8B1O43520 1251 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 CCNDBP1O95273 360 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 AGAP20933 346 aa12.09□□□□□ -0.47
LINC00339-202ENST00000416769 SAT1P21673 171 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms