RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TIA1P31483 386 aaKnown RBP eCLIP14.19□□□□□ -0.145e-6■■■■□ 20.5
USP4-203ENST00000415188 RYKP34925 604 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 PREPP48147 710 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 ARHGDIAP52565 204 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 DPTQ07507 201 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 GTF2H3Q13889 308 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 RAB39AQ14964 217 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 PLCL1Q15111 1095 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 ST3GAL2Q16842 350 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 ZNF648Q5T619 568 aaPredicted RBP14.19□□□□□ -0.14
USP4-203ENST00000415188 CPTPQ5TA50 214 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 OR2T5Q6IEZ7 315 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 ZCCHC8Q6NZY4 707 aaKnown RBP14.19□□□□□ -0.14
USP4-203ENST00000415188 TMEM26Q6ZUK4 368 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 EIF3MQ7L2H7 374 aaKnown RBP14.19□□□□□ -0.14
USP4-203ENST00000415188 PIWIL3Q7Z3Z3 882 aaKnown RBP14.19□□□□□ -0.14
USP4-203ENST00000415188 CADM4Q8NFZ8 388 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 OR7A2PQ8NGA2 310 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 OR2T29Q8NH02 315 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 UBE2E3Q969T4 207 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 COQ8BQ96D53 544 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 NUS1Q96E22 293 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 PPP1R16AQ96I34 528 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 SOX17Q9H6I2 414 aaPredicted RBP14.19□□□□□ -0.14
USP4-203ENST00000415188 ZNF282Q9UDV7 671 aaPredicted RBP14.19□□□□□ -0.14
USP4-203ENST00000415188 SUSD2Q9UGT4 822 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 ATP6V1HQ9UI12 483 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 WASF3Q9UPY6 502 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 SLCO1B1Q9Y6L6 691 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 CEP295Q9C0D2 2601 aa14.19□□□□□ -0.14
USP4-203ENST00000415188 METTL12A8MUP2 240 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 KPNA3O00505 521 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 RNASET2O00584 256 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 HS6ST1O60243 411 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 UGT2B11O75310 529 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 ANXA4P09525 319 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 CD59P13987 128 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 GNSP15586 552 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 FPR1P21462 350 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 CRHBPP24387 322 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 RPL10P27635 214 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 GSTM2P28161 218 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 ACSL1P33121 698 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 KDELR2P33947 212 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 PHEXP78562 749 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 KCNAB2Q13303 367 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 PMS2P3Q13401 168 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 DDX39BQ13838 428 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 NUMA1Q14980 2115 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 HIST2H2ACQ16777 129 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 TMEM52BQ4KMG9 183 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 C6orf141Q5SZD1 244 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 ZNF691Q5VV52 312 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 HIST2H2AA3Q6FI13 130 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 CBLL1Q75N03 491 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 R3HCC1LQ7Z5L2 792 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 LAS2Q8IYD9 372 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 C10orf111Q8N326 155 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 C1orf52Q8N6N3 182 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 CHDHQ8NE62 594 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 OR7G3Q8NG95 312 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 OR13F1Q8NGS4 319 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 FBLIM1Q8WUP2 373 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 ZNF566Q969W8 418 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 C12orf43Q96C57 262 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 MTERF1Q99551 399 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 SGPP1Q9BX95 441 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 BHLHE41Q9C0J9 482 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 DPEP2Q9H4A9 486 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 C6orf106Q9H6K1 298 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 SMURF2Q9HAU4 748 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 BAG5Q9UL15 447 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 VPS4AQ9UN37 437 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 FRYQ5TBA9 3013 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 KMT2BQ9UMN6 2715 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 LOC100130705A0A1B0GUX0 176 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 MGAT4DA6NG13 374 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 SPINT1O43278 529 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 VEGFDO43915 354 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 SEC14L2O76054 403 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 FABP3P05413 133 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 CCDC159P0C7I6 412 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 DNAJA1P31689 397 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 PCGF2P35227 344 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 TMBIM6P55061 237 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 RAE1P78406 368 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 DCTN2Q13561 401 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 ELOAQ14241 798 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 TEAD4Q15561 434 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 HNRNPA1L2Q32P51 320 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 UNC5DQ6UXZ4 953 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 ZNF621Q6ZSS3 439 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 ZNF551Q7Z340 670 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 PTOV1Q86YD1 416 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 DCP2Q8IU60 420 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 OR9A1PQ8NGU1 263 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 GOT1L1Q8NHS2 421 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 HUS1BQ8NHY5 278 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 SETD7Q8WTS6 366 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 SNX19Q92543 992 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms