RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ZMAT1Q5H9K5 638 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 ZNF648Q5T619 568 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 RSBN1Q5VWQ0 802 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 ADNP2Q6IQ32 1131 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 GATAD2AQ86YP4 633 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 OR7G3Q8NG95 312 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 CDC26Q8NHZ8 85 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 DMRTB1Q96MA1 342 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 NDEL1Q9GZM8 345 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 ROGDIQ9GZN7 287 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 FAM83DQ9H4H8 585 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 REEP4Q9H6H4 257 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 ZNF334Q9HCZ1 680 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 RNF186Q9NXI6 227 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 STOX2Q9P2F5 926 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 NFKBIL1Q9UBC1 381 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 B4GALT6Q9UBX8 382 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 TBC1D24Q9ULP9 559 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 CLEC4EQ9ULY5 219 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 HCN4Q9Y3Q4 1203 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 PCDHGB6Q9Y5F9 930 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 PRAMEF25A6NGN4 478 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 ARHGEF33A8MVX0 844 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 FOXE1O00358 373 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 ZNF197O14709 1029 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 CCNKO75909 580 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 CATP04040 527 aaKnown RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 CYP2A6P11509 494 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 PTPN2P17706 415 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 S100A1P23297 94 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 CXCR2P25025 360 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 CRATP43155 626 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 LIMS1P48059 325 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 CDC42P60953 191 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 SPIBQ01892 262 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 GAB1Q13480 694 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 NAE1Q13564 534 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 SCARB2Q14108 478 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 ZNF630Q2M218 657 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 TCTN1Q2MV58 587 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 BCL7AQ4VC05 210 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 ATAD3CQ5T2N8 411 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 GCNT6Q5T4J0 391 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 TRIM40Q6P9F5 258 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 LGI4Q8N135 537 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 OXR1Q8N573 874 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 TRAM1L1Q8N609 369 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.39□□□□□ -0.91
CD44-206ENST00000415148 GEMIN6Q8WXD5 167 aaKnown RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 NIPSNAP1Q9BPW8 284 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 RACGAP1Q9H0H5 632 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 GPBP1L1Q9HC44 474 aaPredicted RBP9.39□□□□□ -0.91
CD44-206ENST00000415148 PLSCR3Q9NRY6 295 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 C1GALT1Q9NS00 363 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 IMPAD1Q9NX62 359 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 NPAP1Q9NZP6 1156 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 SH3BP4Q9P0V3 963 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 INSL5Q9Y5Q6 135 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 SNX8Q9Y5X2 465 aa9.39□□□□□ -0.91
CD44-206ENST00000415148 A0A075B6Q4 140 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 WASH3PC4AMC7 463 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 GRM6O15303 877 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 PCDH7O60245 1069 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 GPR37L1O60883 481 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 PIPP12273 146 aaPredicted RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 CHMP24386 653 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 XCR1P46094 333 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 OR1E2P47887 323 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 IDH2P48735 452 aaKnown RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 EEF1A2Q05639 463 aaKnown RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 DDX39BQ13838 428 aaKnown RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 EXOC3L2Q2M3D2 409 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 MED27Q6P2C8 311 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 BRAT1Q6PJG6 821 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 SERPINA13PQ6UXR4 307 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 UNC5DQ6UXZ4 953 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 FAM92BQ6ZTR7 304 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 SLC44A2Q8IWA5 706 aaPredicted RBP9.38□□□□□ -0.91
CD44-206ENST00000415148 BBS7Q8IWZ6 715 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 FLCNQ8NFG4 579 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 OR6F1Q8NGZ6 308 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 HUS1BQ8NHY5 278 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 MTERF3Q96E29 417 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 WDR34Q96EX3 536 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 OR4K3Q96R72 315 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 PIP5K1AQ99755 562 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CCDC32Q9BV29 185 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 ZDHHC6Q9H6R6 413 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 GPATCH2Q9NW75 528 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 EHD3Q9NZN3 535 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 SLC25A13Q9UJS0 675 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 DUSP12Q9UNI6 340 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 CFL2Q9Y281 166 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 KCNE2Q9Y6J6 123 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 OBSL1O75147 1896 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 LINC00854A0A1B0GVQ3 168 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 GNG14A0A1W2PPG7 69 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 J3KTA2 159 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 ETHE1O95571 254 aa9.38□□□□□ -0.91
CD44-206ENST00000415148 POU2F1P14859 743 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms