RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 ARMC6Q6NXE6 501 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 CWC27Q6UX04 472 aaKnown RBP2.42□□□□□ -2.02
MCF2-204ENST00000414978 ZNF704Q6ZNC4 412 aaPredicted RBP2.42□□□□□ -2.02
MCF2-204ENST00000414978 RTN4RL2Q86UN3 420 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 BEST3Q8N1M1 668 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 CRYBG2Q8N1P7 616 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 PAQR4Q8N4S7 273 aaPredicted RBP2.42□□□□□ -2.02
MCF2-204ENST00000414978 TMEM185AQ8NFB2 350 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 SLC20A1Q8WUM9 679 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 FIG4Q92562 907 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 MAP4K1Q92918 833 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 MTERF3Q96E29 417 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 RAB6CQ9H0N0 254 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 KLK15Q9H2R5 256 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 C3orf14Q9HBI5 128 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 PNRC2Q9NPJ4 139 aaKnown RBP2.42□□□□□ -2.02
MCF2-204ENST00000414978 TMEM45AQ9NWC5 275 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 PARPBPQ9NWS1 579 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 DKK2Q9UBU2 259 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 WNT16Q9UBV4 365 aa2.42□□□□□ -2.02
MCF2-204ENST00000414978 BAZ2AQ9UIF9 1905 aaKnown RBP2.42□□□□□ -2.02
MCF2-204ENST00000414978 RALGAPA1Q6GYQ0 2036 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TRBV5-7A0A0A0MS05 114 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 C2orf92A0A1B0GVN3 265 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.41□□□□□ -2.02
MCF2-204ENST00000414978 HEPACAM2A8MVW5 462 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 ANKRD28O15084 1053 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TSPAN1O60635 241 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 FCGR3BO75015 233 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PGK1P00558 417 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 UGT2B4P06133 528 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 CYP2A7P20853 494 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 DGKAP23743 735 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 BTDP43251 543 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PLCD1P51178 756 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 EIF3EP60228 445 aaKnown RBP2.41□□□□□ -2.02
MCF2-204ENST00000414978 TROAPQ12815 778 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 ODF3L2Q3SX64 289 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 KRT71Q3SY84 523 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 HS1BP3Q53T59 392 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 GGNBP1Q5YKI7 109 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 IGFL4Q6B9Z1 124 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 LCN10Q6JVE6 187 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 CORO6Q6QEF8 472 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PLXDC2Q6UX71 529 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 THEM5Q8N1Q8 247 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 LNX2Q8N448 690 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PCDH20Q8N6Y1 951 aaKnown RBP2.41□□□□□ -2.02
MCF2-204ENST00000414978 OR11H4Q8NGC9 324 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PSMA8Q8TAA3 256 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 CCDC51Q96ER9 411 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TXNDC15Q96J42 360 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 NSMCE2Q96MF7 247 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PKP2Q99959 881 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PIGQQ9BRB3 760 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 LRMDAQ9H2I8 198 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 MIOSQ9NXC5 875 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 QPCTLQ9NXS2 382 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 VPS18Q9P253 973 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PCDHA7Q9UN72 937 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PTPRBP23467 1997 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PLIN4Q96Q06 1357 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 GAGE12BA1L429 117 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 GAGE12HA6NDE8 117 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 OOEPA6NGQ2 149 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 RHBDL1O75783 438 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 CBLP22681 906 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 HLA-FP30511 346 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 SNU13P55769 128 aaKnown RBP2.41□□□□□ -2.02
MCF2-204ENST00000414978 OVGP1Q12889 678 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TNK1Q13470 666 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PTPRCAPQ14761 206 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 EFNB3Q15768 340 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 MIIPQ5JXC2 388 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TXNRD3NBQ6F5E7 133 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TTLL10Q6ZVT0 673 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 BNIPLQ7Z465 357 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 ASPGQ86U10 573 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TMEM139Q8IV31 216 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 DNAJC22Q8N4W6 341 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 LINC01465Q8N7H1 131 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 BBS10Q8TAM1 723 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 CTNNBL1Q8WYA6 563 aaPredicted RBP2.41□□□□□ -2.02
MCF2-204ENST00000414978 HAS1Q92839 578 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TUBGCP3Q96CW5 907 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 ZNF503Q96F45 646 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 LINGO1Q96FE5 620 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 FAM110AQ9BQ89 295 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 MRPL13Q9BYD1 178 aaKnown RBP2.41□□□□□ -2.02
MCF2-204ENST00000414978 SIRPDQ9H106 197 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 GLT8D2Q9H1C3 349 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 HPS4Q9NQG7 708 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 OCIAD1Q9NX40 245 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 MSRB1Q9NZV6 116 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 PAM16Q9Y3D7 125 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 LOXL2Q9Y4K0 774 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 UTP18Q9Y5J1 556 aaKnown RBP eCLIP2.41□□□□□ -2.02
MCF2-204ENST00000414978 RAD50Q92878 1312 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 TICRRQ7Z2Z1 1910 aa2.41□□□□□ -2.02
MCF2-204ENST00000414978 CHD9Q3L8U1 2897 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms