RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LSM11P83369 360 aaKnown RBP eCLIP12.82□□□□□ -0.362e-7■□□□□ 8
VPS54-203ENST00000409558 SHQ1Q6PI26 577 aaKnown RBP12.82□□□□□ -0.36
VPS54-203ENST00000409558 FAM129CQ86XR2 697 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 C7orf61Q8IZ16 206 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 CENPSQ8N2Z9 138 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 FRMD1Q8N878 549 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 OR9A1PQ8NGU1 263 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 SPPL3Q8TCT6 385 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 C16orf78Q8WTQ4 265 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 CHFRQ96EP1 664 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 VPS35Q96QK1 796 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 TMEM245Q9H330 911 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 GPATCH2Q9NW75 528 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 GPSM3Q9Y4H4 160 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 A0A1W2PP55 124 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 ADRB3P13945 408 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 TIE1P35590 1138 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 ST13P50502 369 aaKnown RBP12.82□□□□□ -0.36
VPS54-203ENST00000409558 CLCA4Q14CN2 919 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 ZNF77Q15935 545 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 RBM48Q5RL73 367 aaKnown RBP12.82□□□□□ -0.36
VPS54-203ENST00000409558 GCNT6Q5T4J0 391 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 RAB2BQ8WUD1 216 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 FAR1Q8WVX9 515 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 TAMM41Q96BW9 452 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 LMLNQ96KR4 655 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 ZNF556Q9HAH1 456 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 TM9SF3Q9HD45 589 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 DNAAF2Q9NVR5 837 aaKnown RBP12.82□□□□□ -0.36
VPS54-203ENST00000409558 FBXW2Q9UKT8 454 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 EXO1Q9UQ84 846 aaKnown RBP12.82□□□□□ -0.36
VPS54-203ENST00000409558 PCDHGA10Q9Y5H3 936 aa12.82□□□□□ -0.36
VPS54-203ENST00000409558 TRBC2A0A5B9 178 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 PSIP1O75475 530 aaKnown RBP12.81□□□□□ -0.36
VPS54-203ENST00000409558 NTN1O95631 604 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 GNRH1P01148 92 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 CA3P07451 260 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 C1GALT1C1LP0DN25 315 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 HOXA9P31269 272 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 CRYBA2P53672 197 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 HOXC5Q00444 222 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 CSTF3Q12996 717 aaKnown RBP12.81□□□□□ -0.36
VPS54-203ENST00000409558 PPIGQ13427 754 aaKnown RBP eCLIP12.81□□□□□ -0.361e-6■□□□□ 10.9
VPS54-203ENST00000409558 GRHL2Q6ISB3 625 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 IGFN1Q86VF2 1251 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 CEP295NLQ96MC4 621 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 REEP4Q9H6H4 257 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 RBMX2Q9Y388 322 aaKnown RBP12.81□□□□□ -0.36
VPS54-203ENST00000409558 SLC5A10A0PJK1 596 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 MID1O15344 667 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 OR10H3O60404 316 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 CLPXO76031 633 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 BMPR1AP36894 532 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 IL12RB1P42701 662 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 PRLHRP49683 370 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 INAQ16352 499 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 KIAA1614Q5VZ46 1190 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 EIF3MQ7L2H7 374 aaKnown RBP12.81□□□□□ -0.36
VPS54-203ENST00000409558 ZHX1-C8orf76Q96EF9 292 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 DTD2Q96FN9 168 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 C12orf66Q96MD2 445 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 FAM120CQ9NX05 1096 aaKnown RBP12.81□□□□□ -0.36
VPS54-203ENST00000409558 IL20RAQ9UHF4 553 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 TMED5Q9Y3A6 229 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 A0A1W2PS29 197 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 GSTM2P28161 218 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 TRPC1P48995 793 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 SLC13A2Q13183 592 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 MPEG1Q2M385 716 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 FAM78AQ5JUQ0 283 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 TECPR1Q7Z6L1 1165 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 AMZ2Q86W34 360 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 IQCF1Q8N6M8 205 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 AQP11Q8NBQ7 271 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 KXD1Q9BQD3 176 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 MARCH7Q9H992 704 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 RC3H2Q9HBD1 1191 aaKnown RBP12.81□□□□□ -0.36
VPS54-203ENST00000409558 SERGEFQ9UGK8 458 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 PCM1Q15154 2024 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 COL4A4P53420 1690 aaPredicted RBP12.81□□□□□ -0.36
VPS54-203ENST00000409558 PNLIPRP1P54315 467 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 COLEC12Q5KU26 742 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 C17orf64Q86WR6 236 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 LZICQ8WZA0 190 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 TOX2Q96NM4 488 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 RHBGQ9H310 441 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 DNAJC27Q9NZQ0 273 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 NDUFAF4Q9P032 175 aa12.81□□□□□ -0.36
VPS54-203ENST00000409558 SEC16AO15027 2179 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 RGS5O15539 181 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 SEC14L2O76054 403 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 MXD1Q05195 221 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 CBLL1Q75N03 491 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 SETD9Q8NE22 299 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 COL21A1Q96P44 957 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 DMRT3Q9NQL9 472 aa12.8□□□□□ -0.36
VPS54-203ENST00000409558 MBNL1Q9NR56 388 aaKnown RBP12.8□□□□□ -0.36
VPS54-203ENST00000409558 SPATA6Q9NWH7 488 aaPredicted RBP12.8□□□□□ -0.36
VPS54-203ENST00000409558 CAB39Q9Y376 341 aaPredicted RBP12.8□□□□□ -0.36
VPS54-203ENST00000409558 UGT2B11O75310 529 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms