RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 HOMEZQ8IX15 550 aa27.8■■■□□ 2.04
USP42-202ENST00000404008 ARFGAP2Q8N6H7 521 aa27.8■■■□□ 2.04
USP42-202ENST00000404008 GBP7Q8N8V2 638 aaPredicted RBP27.8■■■□□ 2.04
USP42-202ENST00000404008 FKBP10Q96AY3 582 aa27.8■■■□□ 2.04
USP42-202ENST00000404008 TBCDQ9BTW9 1192 aa27.8■■■□□ 2.04
USP42-202ENST00000404008 ACPTQ9BZG2 426 aa27.8■■■□□ 2.04
USP42-202ENST00000404008 DPH1Q9BZG8 443 aa27.8■■■□□ 2.04
USP42-202ENST00000404008 ILKAPQ9H0C8 392 aaPredicted RBP27.8■■■□□ 2.04
USP42-202ENST00000404008 SLC12A4Q9UP95 1085 aa27.8■■■□□ 2.04
USP42-202ENST00000404008 APC2O95996 2303 aa27.79■■■□□ 2.04
USP42-202ENST00000404008 ZNF860A6NHJ4 632 aa27.79■■■□□ 2.04
USP42-202ENST00000404008 C9J4A7 227 aa27.79■■■□□ 2.04
USP42-202ENST00000404008 OVCH1Q7RTY7 1134 aa27.79■■■□□ 2.04
USP42-202ENST00000404008 TRIM46Q7Z4K8 759 aa27.79■■■□□ 2.04
USP42-202ENST00000404008 ZCCHC14Q8WYQ9 949 aaKnown RBP27.79■■■□□ 2.04
USP42-202ENST00000404008 A0A088AWK7 358 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 C21orf140B9A014 251 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 RTCAO00442 366 aaKnown RBP27.78■■■□□ 2.04
USP42-202ENST00000404008 CHEK2O96017 543 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 ZNF10P21506 573 aaPredicted RBP27.78■■■□□ 2.04
USP42-202ENST00000404008 DLSTP36957 453 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 EIF2S3P41091 472 aaKnown RBP27.78■■■□□ 2.04
USP42-202ENST00000404008 TSFMP43897 325 aaKnown RBP27.78■■■□□ 2.04
USP42-202ENST00000404008 NCF4Q15080 339 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 MRPL14Q6P1L8 145 aaKnown RBP27.78■■■□□ 2.04
USP42-202ENST00000404008 LRRC8CQ8TDW0 803 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 TWIST2Q8WVJ9 160 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 ZNF717Q9BY31 904 aaPredicted RBP27.78■■■□□ 2.04
USP42-202ENST00000404008 ROGDIQ9GZN7 287 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 TUBB1Q9H4B7 451 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 NMRK1Q9NWW6 199 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 VPS29Q9UBQ0 182 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 MAP4K5Q9Y4K4 846 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 CFAP47Q6ZTR5 3102 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 LAMA5O15230 3695 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 NUP210LQ5VU65 1888 aa27.78■■■□□ 2.04
USP42-202ENST00000404008 CCDC88CQ9P219 2028 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 SCELO95171 688 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 ALBP02768 609 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 RAB40ALP0C0E4 278 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 MTTPP55157 894 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 MAT1AQ00266 395 aaKnown RBP27.77■■■□□ 2.04
USP42-202ENST00000404008 OCRLQ01968 901 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 SYT16Q17RD7 645 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 MLIPQ5VWP3 458 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 OR4C11Q6IEV9 310 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 ZNF793Q6ZN11 406 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 PROSER1Q86XN7 944 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 OR5T3Q8NGG3 340 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 CKAP2Q8WWK9 683 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 SERINC2Q96SA4 455 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 SORBS1Q9BX66 1292 aaKnown RBP27.77■■■□□ 2.04
USP42-202ENST00000404008 MRPL1Q9BYD6 325 aaKnown RBP27.77■■■□□ 2.04
USP42-202ENST00000404008 SLC26A1Q9H2B4 701 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 COPS7BQ9H9Q2 264 aaPredicted RBP27.77■■■□□ 2.04
USP42-202ENST00000404008 CLK4Q9HAZ1 481 aaKnown RBP27.77■■■□□ 2.04
USP42-202ENST00000404008 HCN3Q9P1Z3 774 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 TRPC4Q9UBN4 977 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 CTSFQ9UBX1 484 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 GPN3Q9UHW5 284 aaPredicted RBP27.77■■■□□ 2.04
USP42-202ENST00000404008 PTGDR2Q9Y5Y4 395 aa27.77■■■□□ 2.04
USP42-202ENST00000404008 DNAJB6O75190 326 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 HIST1H1TP22492 207 aaPredicted RBP27.76■■■□□ 2.03
USP42-202ENST00000404008 F8A1P23610 371 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 ATP5A1P25705 553 aaKnown RBP27.76■■■□□ 2.03
USP42-202ENST00000404008 CERS1P27544 350 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 SSR2P43308 183 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 RPL14P50914 215 aaKnown RBP27.76■■■□□ 2.03
USP42-202ENST00000404008 OLR1P78380 273 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 HMGCS1Q01581 520 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 TBL3Q12788 808 aaKnown RBP27.76■■■□□ 2.03
USP42-202ENST00000404008 DNASE1L3Q13609 305 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 AP5B1Q2VPB7 878 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 KIRREL3Q8IZU9 778 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 FAM117AQ9C073 453 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 ZNF282Q9UDV7 671 aaPredicted RBP27.76■■■□□ 2.03
USP42-202ENST00000404008 RAXQ9Y2V3 346 aa27.76■■■□□ 2.03
USP42-202ENST00000404008 IGLV3-12A0A075B6K2 115 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 KLK10O43240 276 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 B3GALT2O43825 422 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 CNOT3O75175 753 aaKnown RBP27.75■■■□□ 2.03
USP42-202ENST00000404008 LIFP15018 202 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 BSGP35613 385 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 VASH2Q86V25 355 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 SHISA5Q8N114 240 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 METTL4Q8N3J2 472 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 ENDOVQ8N8Q3 282 aaKnown RBP27.75■■■□□ 2.03
USP42-202ENST00000404008 ACOT4Q8N9L9 421 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 KDF1Q8NAX2 398 aaPredicted RBP27.75■■■□□ 2.03
USP42-202ENST00000404008 OR51Q1Q8NH59 317 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 KIAA1143Q96AT1 154 aaPredicted RBP27.75■■■□□ 2.03
USP42-202ENST00000404008 MAGEB18Q96M61 343 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 NPLQ9BXD5 320 aaPredicted RBP27.75■■■□□ 2.03
USP42-202ENST00000404008 GPR87Q9BY21 358 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 WDR54Q9H977 334 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 GPN2Q9H9Y4 310 aaPredicted RBP27.75■■■□□ 2.03
USP42-202ENST00000404008 MKKSQ9NPJ1 570 aaPredicted RBP27.75■■■□□ 2.03
USP42-202ENST00000404008 AHSPQ9NZD4 102 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 CCL27Q9Y4X3 112 aa27.75■■■□□ 2.03
USP42-202ENST00000404008 PCDHGA6Q9Y5G7 932 aa27.75■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms