RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SPEF2Q9C093 1822 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 GOLGA4Q13439 2230 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 HTR3EA5X5Y0 456 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 TTC34A8MYJ7 566 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 OXSR1O95747 527 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PRKCAP17252 672 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 RAB3BP20337 219 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 ARHGAP1Q07960 439 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 CHADLQ6NUI6 762 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 AGTRAPQ6RW13 159 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC16A9Q7RTY1 509 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC15A3Q8IY34 581 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 FBXO15Q8NCQ5 510 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 CCDC54Q8NEL0 328 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 PMEPA1Q969W9 287 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM184CQ9NVA4 438 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 STYXL1Q9Y6J8 313 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 CDH10Q9Y6N8 788 aa9.92□□□□□ -0.82
LIMCH1-203ENST00000396595 TTC24A2A3L6 582 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 RHPN2P1A8MT19 583 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 J3QLW9 94 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TXNL1O43396 289 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 COQ9O75208 318 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CLIC3O95833 236 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 PRKCGP05129 697 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF19P17023 458 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 GDF5P43026 501 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 RPS3AP61247 264 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 SEC23BQ15437 767 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CTC1Q2NKJ3 1217 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 DEFB115Q30KQ5 88 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 C10orf62Q5T681 223 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 GHDCQ8N2G8 530 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 METTL4Q8N3J2 472 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 NXPE2Q96DL1 559 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 SLC38A3Q99624 504 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 SEZ6LQ9BYH1 1024 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 KCNH6Q9H252 994 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF696Q9H7X3 374 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 PAQR5Q9NXK6 330 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 UTS2RQ9UKP6 389 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 RNF11Q9Y3C5 154 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CAMTA1Q9Y6Y1 1673 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CASC3O15234 703 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 PEX10O60683 326 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 VAMP1P23763 118 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 MAPK3P27361 379 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 MECP2P51608 486 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 PSMA6P60900 246 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ENPP2Q13822 863 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 REEP3Q6NUK4 255 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TMIGD1Q6UXZ0 262 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 LRRTM4Q86VH4 590 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CAMKVQ8NCB2 501 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 GALNT11Q8NCW6 608 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 SH3RF2Q8TEC5 729 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 OSTF1Q92882 214 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 C3orf49Q96BT1 292 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 MINDY3Q9H8M7 445 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 DNAJC27Q9NZQ0 273 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CACNA1FO60840 1977 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 INMT-MINDY4F8WBC2 141 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 MT-ND5P03915 603 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CXCR1P25024 350 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 BLKP51451 505 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CAPZA1P52907 286 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 OLIG2Q13516 323 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ZNF227Q86WZ6 799 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 SNX29P2Q8IUI4 249 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TCEANCQ8N8B7 351 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 GRHL3Q8TE85 626 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 PEX13Q92968 403 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 BIRC8Q96P09 236 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TSGA13Q96PP4 275 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 VPS25Q9BRG1 176 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TBL1XR1Q9BZK7 514 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 NLE1Q9NVX2 485 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TMEM248Q9NWD8 314 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TAS2R10Q9NYW0 307 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 IL36AQ9UHA7 158 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 KCTD3Q9Y597 815 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CAPN5O15484 640 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ACP5P13686 325 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TAS2R50P59544 299 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 CREB5Q02930 508 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 KCNC3Q14003 757 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 TICAM1Q8IUC6 712 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 YIPF7Q8N8F6 280 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 DBF4BQ8NFT6 615 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ASPNQ9BXN1 380 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 SLA2Q9H6Q3 261 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 GKN1Q9NS71 199 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ELOVL2Q9NXB9 296 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 HCN3Q9P1Z3 774 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 GIMAP2Q9UG22 337 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 YIPF1Q9Y548 306 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 PCDHB3Q9Y5E6 796 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 ANKRD26Q9UPS8 1709 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 A0A096LPI6 279 aa9.91□□□□□ -0.82
LIMCH1-203ENST00000396595 KDELR3O43731 214 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms