RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 CREG1O75629 220 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 ANGPTL1O95841 491 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 SYPP08247 313 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 MTHFD2P13995 350 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 TRAF3Q13114 568 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 MFSD13AQ14CX5 517 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 IYDQ6PHW0 289 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 NXPE4Q6UWF7 544 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 LRRC25Q8N386 305 aaPredicted RBP3.26□□□□□ -1.89
VPS13C-203ENST00000395896 PROKR1Q8TCW9 393 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 MIR1-1HGQ9H1L0 117 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 APOBEC3BQ9UH17 382 aaKnown RBP3.26□□□□□ -1.89
VPS13C-203ENST00000395896 CD84Q9UIB8 345 aa3.26□□□□□ -1.89
VPS13C-203ENST00000395896 PRAMEF12O95522 483 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 IFNA16P05015 189 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 DDCP20711 480 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CPN2P22792 545 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CTGFP29279 349 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CCT3P49368 545 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 BLVRAP53004 296 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CDK6Q00534 326 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SMAD4Q13485 552 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TMEM198Q66K66 360 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ZNF614Q8N883 585 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 DCBLD1Q8N8Z6 715 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 OR2L5Q8NG80 312 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 OR5L2Q8NGL0 311 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 MAPK15Q8TD08 544 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SLC47A1Q96FL8 570 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 UHRF1Q96T88 793 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SLC35A5Q9BS91 424 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 MCOLN1Q9GZU1 580 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CD248Q9HCU0 757 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 IGSF5Q9NSI5 407 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 HRASLS2Q9NWW9 162 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 NCOA6Q14686 2063 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 PHF3Q92576 2039 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TRBC2A0A5B9 178 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SH3D21A4FU49 640 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 OR6A2O95222 327 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CFL1P23528 166 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 PRPH2P23942 346 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 FKBP2P26885 142 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 GABRB3P28472 473 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 BMP8BP34820 402 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CCR5P51681 352 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CDKN2DP55273 166 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 HMGCS1Q01581 520 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 FOLH1Q04609 750 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 KIAA1614Q5VZ46 1190 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 COMMD6Q7Z4G1 85 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 BMP8AQ7Z5Y6 402 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 BPHLQ86WA6 291 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CACUL1Q86Y37 369 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CACTIN-AS1Q8N1I8 211 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 PHTF2Q8N3S3 785 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 OR8J1Q8NGP2 316 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ZNF480Q8WV37 535 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TMEM234Q8WY98 164 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TANKQ92844 425 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 OTULINQ96BN8 352 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ABCD2Q9UBJ2 740 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 EMCNQ9ULC0 261 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 WDR45Q9Y484 360 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 AURKAO14965 403 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ABCB7O75027 752 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TRIM3O75382 744 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SAGP10523 405 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 AFF3P51826 1226 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 DIO3P55073 304 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 RELAQ04206 551 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 DAG1Q14118 895 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 GRIN2CQ14957 1233 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.25□□□□□ -1.895e-6■■■□□ 14.8
VPS13C-203ENST00000395896 KCTD21Q4G0X4 260 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 GPALPP1Q8IXQ4 340 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 OIT3Q8WWZ8 545 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 HLA-CQ95604 372 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 GPR78Q96P69 363 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TMEM181Q9P2C4 612 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CPNE7Q9UBL6 633 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TAC3Q9UHF0 121 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 NME7Q9Y5B8 376 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SETD2Q9BYW2 2564 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 HNRNPCL2B2RXH8 293 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TNFRSF11BO00300 401 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ASNA1O43681 348 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 AKAP8O43823 692 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SLC28A2O43868 658 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 IGFALSP35858 605 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 KIAA1024LP59773 190 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SLC13A2Q13183 592 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 VMACQ2NL98 169 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 GPAT3Q53EU6 434 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 XKR7Q5GH72 579 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TMPRSS11AQ6ZMR5 421 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 GDPGP1Q6ZNW5 385 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SLC22A12Q96S37 553 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 MAPKAP1Q9BPZ7 522 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 LINC00597Q9H2U6 94 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms