RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PRICKLE3O43900 615 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 RSL1D1O76021 490 aaKnown RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 NELFEP18615 380 aaKnown RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 POLR2CP19387 275 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 VARSP26640 1264 aaKnown RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 TSPAN7P41732 249 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 GSK3BP49841 420 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 EEFSECP57772 596 aaKnown RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 LIPEQ05469 1076 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 PTGR1Q14914 329 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 CPSF6Q16630 551 aaKnown RBP eCLIP9.74□□□□□ -0.85
VPS53-202ENST00000389040 PTCHD3Q3KNS1 767 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 TMTC4Q5T4D3 741 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 CACHD1Q5VU97 1274 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SYTL1Q8IYJ3 562 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 LINC01555Q8NAE3 123 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 GOLM1Q8NBJ4 401 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 OR8K5Q8NH50 307 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 TCTN2Q96GX1 697 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SLC41A2Q96JW4 573 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 TGM7Q96PF1 710 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 FCRL4Q96PJ5 515 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 OR2A14Q96R47 310 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 KCTD14Q9BQ13 255 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 ZPBPQ9BS86 351 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 HAUS8Q9BT25 410 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SYNDIG1Q9H7V2 258 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 ARMC1Q9NVT9 282 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 ASIC5Q9NY37 505 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 STOX2Q9P2F5 926 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 EGFL7Q9UHF1 273 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 CNOT11Q9UKZ1 510 aaKnown RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 ATXN7L1Q9ULK2 861 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 MSRB2Q9Y3D2 182 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 ARHGEF17Q96PE2 2063 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 A0A0J9YY10 115 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 TXNDC9O14530 226 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SEC22BO75396 215 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 PDYNP01213 254 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 IMPA1P29218 277 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 BDKRB1P46663 353 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 LSSP48449 732 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 PDX1P52945 283 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 RAB15P59190 212 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 PRDX1Q06830 199 aaKnown RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 IL11RAQ14626 422 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 KIAA0040Q15053 153 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SF1Q15637 639 aaKnown RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 PHF19Q5T6S3 580 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 CAPN13Q6MZZ7 669 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 NANOGP8Q6NSW7 305 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 AGTRAPQ6RW13 159 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 DLEU7Q6UYE1 221 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 PTRH1Q86Y79 214 aaKnown RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 SPPL2CQ8IUH8 684 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 KLHDC8AQ8IYD2 350 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 LRRC56Q8IYG6 542 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 LIX1Q8N485 282 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 GLB1L3Q8NCI6 653 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 OR2A1Q8NGT9 310 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 OR56A3Q8NH54 315 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 EME1Q96AY2 570 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 PYCR2Q96C36 320 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 CCDC74BQ96LY2 380 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SGPP1Q9BX95 441 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 ACPTQ9BZG2 426 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SEMA6AQ9H2E6 1030 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 Q9H521 79 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 ELOVL6Q9H5J4 265 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 XKR8Q9H6D3 395 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 NANOGQ9H9S0 305 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 CCDC177Q9NQR7 707 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 FBXO8Q9NRD0 319 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 ENAMQ9NRM1 1142 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 CCM2LQ9NUG4 571 aaPredicted RBP9.74□□□□□ -0.85
VPS53-202ENST00000389040 DNAJC11Q9NVH1 559 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 C1orf109Q9NX04 203 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 RAB26Q9ULW5 256 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SNX6Q9UNH7 406 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SLC22A14Q9Y267 594 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 SNX13Q9Y5W8 968 aa9.74□□□□□ -0.85
VPS53-202ENST00000389040 DCHS1Q96JQ0 3298 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 KCNE1BA0A087WTH5 132 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 DHRS12A0PJE2 317 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 KRT87PA6NCN2 255 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 ISM1B1AKI9 464 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 PLD2O14939 933 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 DENRO43583 198 aaKnown RBP9.73□□□□□ -0.85
VPS53-202ENST00000389040 DXOO77932 396 aaKnown RBP9.73□□□□□ -0.85
VPS53-202ENST00000389040 UGT2B7P16662 529 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 CDH3P22223 829 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 PSMA4P25789 261 aaKnown RBP9.73□□□□□ -0.85
VPS53-202ENST00000389040 CMPK1P30085 196 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 HSPA13P48723 471 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 ARL4DP49703 201 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 DGKQP52824 942 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 ACY1Q03154 408 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 PWP1Q13610 501 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 RTP5Q14D33 572 aa9.73□□□□□ -0.85
VPS53-202ENST00000389040 PDK3Q15120 406 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms