RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 KCNC2Q96PR1 638 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 EFCAB11Q9BUY7 163 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 REEP1Q9H902 201 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 CERS4Q9HA82 394 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 CCDC177Q9NQR7 707 aaPredicted RBP12.8□□□□□ -0.36
CCDC3-202ENST00000378839 KRT84Q9NSB2 600 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 SERGEFQ9UGK8 458 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 PSME2Q9UL46 239 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 ASF1AQ9Y294 204 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 PADI2Q9Y2J8 665 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 PCDHGA6Q9Y5G7 932 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 ORC6Q9Y5N6 252 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 LYVE1Q9Y5Y7 322 aa12.8□□□□□ -0.36
CCDC3-202ENST00000378839 FEZF1A0PJY2 475 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PLPP1O14494 284 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 GPR37L1O60883 481 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 B4GALT2O60909 372 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 OPRD1P41143 372 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 CYP4F2P78329 520 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 HEATR4Q86WZ0 1026 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 ENTHD1Q8IYW4 607 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 ATG16L2Q8NAA4 619 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 OR4C15Q8NGM1 316 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 EHD1Q9H4M9 534 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 LHX9Q9NQ69 397 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 MBNL1Q9NR56 388 aaKnown RBP12.79□□□□□ -0.36
CCDC3-202ENST00000378839 C5AR2Q9P296 337 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 ZNF282Q9UDV7 671 aaPredicted RBP12.79□□□□□ -0.36
CCDC3-202ENST00000378839 SNX11Q9Y5W9 270 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PRAMEF33A0A0G2JMD5 474 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 C17orf113A0A1B0GUU1 675 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 IGLON5A6NGN9 336 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 J3QRK9 145 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PRAMEF10O60809 474 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 C9P02748 559 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PCCBP05166 539 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 DRD3P35462 400 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 ELP6Q0PNE2 266 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 NPRL3Q12980 569 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 KIAA1614Q5VZ46 1190 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PIAS4Q8N2W9 510 aaPredicted RBP12.79□□□□□ -0.36
CCDC3-202ENST00000378839 AMER3Q8N944 861 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 C11orf65Q8NCR3 313 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 VPS37AQ8NEZ2 397 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 STARD8Q92502 1023 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 FEVQ99581 238 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 DPEP2Q9H4A9 486 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PLGRKTQ9HBL7 147 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 MYNNQ9NPC7 610 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 ENPP5Q9UJA9 477 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 GPR34Q9UPC5 381 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 MT-ND2P03891 347 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 TGFBR1P36897 503 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 WASP42768 502 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 MAGEA8P43361 318 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 RPS26P62854 115 aaKnown RBP12.79□□□□□ -0.36
CCDC3-202ENST00000378839 TOP3AQ13472 1001 aaPredicted RBP12.79□□□□□ -0.36
CCDC3-202ENST00000378839 C2orf27AQ580R0 203 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PRAMEF14Q5SWL7 426 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PRAMEF13Q5VWM6 474 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 TANGO2Q6ICL3 276 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 GPR153Q6NV75 609 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 BTLAQ7Z6A9 289 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 SLC5A8Q8N695 610 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 SLC15A4Q8N697 577 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 SMYD1Q8NB12 490 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 RAB2BQ8WUD1 216 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 HERVK_113Q902F9 699 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 DNASE1L2Q92874 299 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PPCDCQ96CD2 204 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 REPS1Q96D71 796 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 NRBF2Q96F24 287 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 EPYCQ99645 322 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 NIPSNAP1Q9BPW8 284 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 TMEM106CQ9BVX2 250 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 EPS8L2Q9H6S3 715 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 CXorf36Q9H7Y0 433 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PRDM8Q9NQV8 689 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 WARS2Q9UGM6 360 aaKnown RBP12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PAIP2BQ9ULR5 123 aaKnown RBP12.79□□□□□ -0.36
CCDC3-202ENST00000378839 WDR37Q9Y2I8 494 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 PCDHGB1Q9Y5G3 927 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 DENND4AQ7Z401 1863 aa12.79□□□□□ -0.36
CCDC3-202ENST00000378839 A0A1W2PPV9 198 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 ZNF99A8MXY4 864 aaPredicted RBP12.78□□□□□ -0.36
CCDC3-202ENST00000378839 PPM1DO15297 605 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 NDUFS2O75306 463 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 SLC19A1P41440 591 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 UBE3AQ05086 875 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 CAMK2GQ13555 558 aaPredicted RBP12.78□□□□□ -0.36
CCDC3-202ENST00000378839 ATP1A4Q13733 1029 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 SCARB2Q14108 478 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 WSCD2Q2TBF2 565 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 EGFLAMQ63HQ2 1017 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 PNCKQ6P2M8 343 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 TMIGD1Q6UXZ0 262 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 SLC9B2Q86UD5 537 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 PDZD3Q86UT5 571 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 TERB1Q8NA31 727 aa12.78□□□□□ -0.36
CCDC3-202ENST00000378839 OR52N2Q8NGI0 321 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms