RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 ERI1Q8IV48 349 aaKnown RBP12.69□□□□□ -0.38
NPHP4-203ENST00000378169 LKAAEAR1Q8TD35 194 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 SNX33Q8WV41 574 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 LINC01599Q8WXQ3 324 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 NEIL2Q969S2 332 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 TMEM125Q96AQ2 219 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 C1QTNF1Q9BXJ1 281 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 DNAJC27Q9NZQ0 273 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 MALT1Q9UDY8 824 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 GPR45Q9Y5Y3 372 aa12.69□□□□□ -0.38
NPHP4-203ENST00000378169 TLR4O00206 839 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 CBFA2T3O75081 653 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 ADH1BP00325 375 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 PENKP01210 267 aaPredicted RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 C8BP07358 591 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 CPOXP36551 454 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 SLC7A9P82251 487 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 NXPE4Q6UWF7 544 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 CPXM2Q8N436 756 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 OR6K6Q8NGW6 343 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 PROKR1Q8TCW9 393 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 AP3S1Q92572 193 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 OR2M4Q96R27 311 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 WDR45Q9Y484 360 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 TTC3P53804 2025 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 IGLV3-10A0A075B6K4 115 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 PSIP1O75475 530 aaKnown RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 REM1O75628 298 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 APOL3O95236 402 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 PRAMEF12O95522 483 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 RPLP0P05388 317 aaKnown RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 SDC1P18827 310 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 CLK3P49761 638 aaKnown RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 RAB30Q15771 203 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 TCEANCQ8N8B7 351 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 OR8K5Q8NH50 307 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 FOXJ1Q92949 421 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 RFKQ969G6 155 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 WBP2Q969T9 261 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 TSACCQ96A04 125 aaPredicted RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 ACPTQ9BZG2 426 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 MAGED1Q9Y5V3 778 aaPredicted RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 RNGTTO60942 597 aaKnown RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 TNFP01375 233 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 AHCYP23526 432 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 SLC6A11P48066 632 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 MYBPC1Q00872 1141 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 C6orf141Q5SZD1 244 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 MFSD6LQ8IWD5 586 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 NETO1Q8TDF5 533 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 ZNF483Q8TF39 744 aaPredicted RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 MYEOVQ96EZ4 313 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 NKIRAS2Q9NYR9 191 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 DNMT3BQ9UBC3 853 aaKnown RBP12.68□□□□□ -0.38
NPHP4-203ENST00000378169 MKL2Q9ULH7 1088 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 HCN4Q9Y3Q4 1203 aa12.68□□□□□ -0.38
NPHP4-203ENST00000378169 SMIM30A4D0T7 59 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 UBFD1O14562 309 aaKnown RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 SNPHO15079 494 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 RASAL1O95294 804 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 SLAMF1Q13291 335 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 HNRNPA1L2Q32P51 320 aaKnown RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 C5orf22Q49AR2 442 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 MANEALQ5VSG8 457 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 TMEM207Q6UWW9 146 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 OR4N5Q8IXE1 308 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 CAPSLQ8WWF8 208 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 DPYSL5Q9BPU6 564 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 DCSTAMPQ9H295 470 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 TMEM181Q9P2C4 612 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 CCDC182A6NF36 153 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 FAM170BA6NMN3 283 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 SEC16AO15027 2179 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 TIMP2P16035 220 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 CSTF2P33240 577 aaKnown RBP eCLIP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 RPL34P49207 117 aaKnown RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 SPATS1Q496A3 300 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 COQ5Q5HYK3 327 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 MZT2BQ6NZ67 158 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 ABHD13Q7L211 337 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 METTL27Q8N6F8 245 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 HPS1Q92902 700 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 GSDMCQ9BYG8 508 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 YTHDF1Q9BYJ9 559 aaKnown RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 UCK2Q9BZX2 261 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 PTBP2Q9UKA9 531 aaKnown RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 CYP8B1Q9UNU6 501 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 RPL36Q9Y3U8 105 aaKnown RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 NUP214P35658 2090 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 E2F3O00716 465 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 FBP2O00757 339 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 ABCB7O75027 752 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 MITFO75030 526 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-203ENST00000378169 HSD3B1P14060 373 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 HSD3B2P26439 372 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 PTGER1P34995 402 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 GSTM4Q03013 218 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 TCEAL5Q5H9L2 206 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 ZNF773Q6PK81 442 aa12.67□□□□□ -0.38
NPHP4-203ENST00000378169 OR2A12Q8NGT7 310 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms