RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 PCSK9Q8NBP7 692 aaKnown RBP20.28■□□□□ 0.84
UPF3A-202ENST00000375299 RASSF5Q8WWW0 418 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 COQ8BQ96D53 544 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 PIP5K1AQ99755 562 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 MARCH5Q9NX47 278 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 MAPRE3Q9UPY8 281 aa20.28■□□□□ 0.84
UPF3A-202ENST00000375299 LSM2Q9Y333 95 aaKnown RBP20.28■□□□□ 0.84
UPF3A-202ENST00000375299 NPIPB15A6NHN6 443 aaPredicted RBP20.27■□□□□ 0.84
UPF3A-202ENST00000375299 GFYI3L273 518 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 TFECO14948 347 aaPredicted RBP20.27■□□□□ 0.84
UPF3A-202ENST00000375299 SOCS5O75159 536 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 YES1P07947 543 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 ANXA4P09525 319 aaPredicted RBP20.27■□□□□ 0.84
UPF3A-202ENST00000375299 CHRNB1P11230 501 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 CNR2P34972 360 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 CRISP1P54107 249 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 PTPN5P54829 565 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 PRKCZQ05513 592 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 SNAP47Q5SQN1 464 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 ZNF648Q5T619 568 aaPredicted RBP20.27■□□□□ 0.84
UPF3A-202ENST00000375299 KLHL17Q6TDP4 642 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 ZNF852Q6ZMS4 543 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 AQP11Q8NBQ7 271 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 NFKBIDQ8NI38 313 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 SLC7A6Q92536 515 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 ALG14Q96F25 216 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 METTL2AQ96IZ6 378 aaKnown RBP20.27■□□□□ 0.84
UPF3A-202ENST00000375299 VPS35Q96QK1 796 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 MMP28Q9H239 520 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 SEC14L4Q9UDX3 406 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 KLHL20Q9Y2M5 609 aa20.27■□□□□ 0.84
UPF3A-202ENST00000375299 RNASET2O00584 256 aaKnown RBP20.27■□□□□ 0.83
UPF3A-202ENST00000375299 SOX3P41225 446 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 TAB1Q15750 504 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 CYP27C1Q4G0S4 372 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 ERAP2Q6P179 960 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 NOXA1Q86UR1 476 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 TRIM69Q86WT6 500 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 WFDC5Q8TCV5 224 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 GEMIN6Q8WXD5 167 aaKnown RBP20.27■□□□□ 0.83
UPF3A-202ENST00000375299 KLF16Q9BXK1 252 aaPredicted RBP20.27■□□□□ 0.83
UPF3A-202ENST00000375299 SLC22A4Q9H015 551 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 TIGARQ9NQ88 270 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 SNTG1Q9NSN8 517 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 WDR70Q9NW82 654 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 SH3BP4Q9P0V3 963 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 MBD1Q9UIS9 605 aaPredicted RBP20.27■□□□□ 0.83
UPF3A-202ENST00000375299 CMAHPQ9Y471 501 aa20.27■□□□□ 0.83
UPF3A-202ENST00000375299 LINC00854A0A1B0GVQ3 168 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 C2orf78A6NCI8 922 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 CSO75390 466 aaKnown RBP20.26■□□□□ 0.83
UPF3A-202ENST00000375299 GADD45GO95257 159 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 ETHE1O95571 254 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 CSTF2P33240 577 aaKnown RBP eCLIP20.26■□□□□ 0.83
UPF3A-202ENST00000375299 HTTP42858 3142 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 PRIM2P49643 509 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 HMGA2P52926 109 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 RUNX1T1Q06455 604 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 SCN1BQ07699 218 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 RBBP4Q09028 425 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 HYAL2Q12891 473 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 TRIM60Q495X7 471 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 FUT10Q6P4F1 479 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 FAM46DQ8NEK8 389 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 SLC25A19Q9HC21 320 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 SNX7Q9UNH6 387 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 MGAT4DA6NG13 374 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 NT5C1B-RDH14C9J2C7 533 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 E7EQ34 232 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 ZNF670-ZNF695F2Z2N8 137 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 H7C4K7 107 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 C1SP09871 688 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 PRKAR2AP13861 404 aaKnown RBP20.26■□□□□ 0.83
UPF3A-202ENST00000375299 HSD3B1P14060 373 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 HSD3B2P26439 372 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 FCHO2Q0JRZ9 810 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 LRRC74AQ0VAA2 488 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 ASAH1Q13510 395 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 DOC2AQ14183 400 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 PPP2R2DQ66LE6 453 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 FRMPD2BQ6IN97 320 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 CRTC1Q6UUV9 634 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 ZNF438Q7Z4V0 828 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 FAM181AQ8N9Y4 354 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 RACGAP1Q9H0H5 632 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 STUB1Q9UNE7 303 aa20.26■□□□□ 0.83
UPF3A-202ENST00000375299 IGLV3-16A0A075B6K0 115 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 IQCMA0A1B0GVH7 501 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 FAM25AB3EWG3 89 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 FAM25CB3EWG5 89 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 FAM25GB3EWG6 89 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 SH3BGRLO75368 114 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 PSMA1P25786 263 aaKnown RBP20.25■□□□□ 0.83
UPF3A-202ENST00000375299 CRYBB2P43320 205 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 GNG2P59768 71 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 GALK2Q01415 458 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 GANABQ14697 944 aaKnown RBP20.25■□□□□ 0.83
UPF3A-202ENST00000375299 GPAT3Q53EU6 434 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 YIF1BQ5BJH7 314 aa20.25■□□□□ 0.83
UPF3A-202ENST00000375299 OR52N2Q8NGI0 321 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms