RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FAM217AQ8IXS0 508 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 CIDECQ96AQ7 238 aaPredicted RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 TRNT1Q96Q11 434 aaKnown RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 VPS35Q96QK1 796 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 OR4K3Q96R72 315 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 MCCC1Q96RQ3 725 aaPredicted RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 LYSMD1Q96S90 227 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 HHATLQ9HCP6 504 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 THSD1Q9NS62 852 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 NPAP1Q9NZP6 1156 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 CRNNQ9UBG3 495 aaPredicted RBP15.71■□□□□ 0.11
SDC4-201ENST00000372733 V9GYH0 126 aa15.71■□□□□ 0.11
SDC4-201ENST00000372733 FAM172BPA6NC97 362 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 SEMA3DO95025 777 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 ATP1B2P14415 290 aaPredicted RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 CHMP24386 653 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 CXCR2P25025 360 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 PTX3P26022 381 aaPredicted RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 CD70P32970 193 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 RPS19P39019 145 aaKnown RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 XCR1P46094 333 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 TAB1Q15750 504 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 TOR1AIP1Q5JTV8 583 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 PLAG1Q6DJT9 500 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 USP45Q70EL2 814 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 CAMKMTQ7Z624 323 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 NLRP8Q86W28 1048 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 ARL14EPQ8N8R7 260 aaPredicted RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 ST13P5Q8NFI4 369 aaPredicted RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 OR2AP1Q8NGE2 309 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 HUS1BQ8NHY5 278 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 ASB15Q8WXK1 588 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 COQ8BQ96D53 544 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 TMCO6Q96DC7 493 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 SCRN2Q96FV2 425 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 TRMT61AQ96FX7 289 aaKnown RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 ST6GAL2Q96JF0 529 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 PIP5K1AQ99755 562 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 DYRK4Q9NR20 520 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 HCN4Q9Y3Q4 1203 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 MAP4K5Q9Y4K4 846 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 YIPF1Q9Y548 306 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 A0A075B6Q4 140 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 SLC16A5O15375 505 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 UGDHO60701 494 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 TIA1P31483 386 aaKnown RBP eCLIP15.7■□□□□ 0.17e-9■■■■□ 22.1
SDC4-201ENST00000372733 TIE1P35590 1138 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 FEN1P39748 380 aaKnown RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 RPS13P62277 151 aaKnown RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 BAK1Q16611 211 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 LEXMQ3ZCV2 418 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 PLEKHS1Q5SXH7 462 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 ARMC4Q5T2S8 1044 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 GRHL2Q6ISB3 625 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 OTOP2Q7RTS6 562 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 HS6ST3Q8IZP7 471 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 MAGEB10Q96LZ2 347 aaPredicted RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 CLN6Q9NWW5 311 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 CNOT2Q9NZN8 540 aaKnown RBP15.7■□□□□ 0.1
SDC4-201ENST00000372733 CLEC2DQ9UHP7 191 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 TRAPPC4Q9Y296 219 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 AP1M2Q9Y6Q5 423 aa15.7■□□□□ 0.1
SDC4-201ENST00000372733 OR2AG2A6NM03 316 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 ZAR1LA6NP61 321 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 TBKBP1A7MCY6 615 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 RNASET2O00584 256 aaKnown RBP15.69■□□□□ 0.1
SDC4-201ENST00000372733 TFECO14948 347 aaPredicted RBP15.69■□□□□ 0.1
SDC4-201ENST00000372733 ENTPD6O75354 484 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 GADD45GO95257 159 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 BDKRB1P46663 353 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 PRIM2P49643 509 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 ZNF157P51786 506 aaPredicted RBP15.69■□□□□ 0.1
SDC4-201ENST00000372733 MC1RQ01726 317 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 ZNF79Q15937 498 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 AGTRAPQ6RW13 159 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 IFNL1Q8IU54 200 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 FLCNQ8NFG4 579 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 DBF4BQ8NFT6 615 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 OR7G3Q8NG95 312 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 GEMIN6Q8WXD5 167 aaKnown RBP15.69■□□□□ 0.1
SDC4-201ENST00000372733 SNTG1Q9NSN8 517 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 DNAJC27Q9NZQ0 273 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 ALPK3Q96L96 1907 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 H0YIV9 168 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 AGRPO00253 132 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 GASTP01350 101 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 ZNF8P17098 575 aaPredicted RBP15.69■□□□□ 0.1
SDC4-201ENST00000372733 CD72P21854 359 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 LIMS1P48059 325 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 CSNK1DP48730 415 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 ACLYP53396 1101 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 TMEM150AQ86TG1 271 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 RNF130Q86XS8 419 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 CHTF18Q8WVB6 975 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 CLP1Q92989 425 aaKnown RBP15.69■□□□□ 0.1
SDC4-201ENST00000372733 SCAMP4Q969E2 229 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 SNX18Q96RF0 628 aa15.69■□□□□ 0.1
SDC4-201ENST00000372733 NMNAT1Q9HAN9 279 aaPredicted RBP15.69■□□□□ 0.1
SDC4-201ENST00000372733 STOX2Q9P2F5 926 aaPredicted RBP15.69■□□□□ 0.1
SDC4-201ENST00000372733 B4GALT6Q9UBX8 382 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms