RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 A0A1W2PRB8 838 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 ACVR2AP27037 513 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 TPP2P29144 1249 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 RXRGP48443 463 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 FADDQ13158 208 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 AQP6Q13520 282 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 MOGQ16653 247 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 ZNF829Q3KNS6 432 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 TRIM40Q6P9F5 258 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 DSG4Q86SJ6 1040 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 SLC9B2Q86UD5 537 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 RNF130Q86XS8 419 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 KRT78Q8N1N4 520 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 OXR1Q8N573 874 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 TMEM121BQ9BXQ6 578 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 SLC6A16Q9GZN6 736 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 HCN2Q9UL51 889 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 TESMINQ9Y4I5 508 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 LYVE1Q9Y5Y7 322 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 SH3PXD2BA1X283 911 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 C1QTNF3-AMACRE9PGA6 284 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 TBX6O95947 436 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 NR4A1P22736 598 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 SPCS2Q15005 226 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 TBC1D25Q3MII6 688 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 PIP5KL1Q5T9C9 394 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 IKBIPQ70UQ0 350 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 CCDC80Q76M96 950 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 ZNF784Q8NCA9 323 aaPredicted RBP19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 RAB7BQ96AH8 199 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 RHNO1Q9BSD3 238 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 LGR4Q9BXB1 951 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 TM7SF3Q9NS93 570 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 TAAR2Q9P1P5 351 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 DENND4AQ7Z401 1863 aa19.92■□□□□ 0.78
CCDC88B-203ENST00000359902 hCG_2014768A0A024R1R8 64 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 PRAMEF25A6NGN4 478 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 TNFRSF11BO00300 401 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 AXIN1O15169 862 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 EPHX1P07099 455 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 ERGP11308 486 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 CHI3L1P36222 383 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 MAP2K4P45985 399 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 OR1E2P47887 323 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 ELOAQ14241 798 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 CTF1Q16619 201 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 CYP2A13Q16696 494 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 IFI44LQ53G44 452 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 FNDC8Q8TC99 324 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 GIPC3Q8TF64 312 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 GABARAPL3Q9BY60 117 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 RASSF1Q9NS23 344 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 IGLON5A6NGN9 336 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 ADAMDEC1O15204 470 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 PCDHGA12O60330 932 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 MAN1A2O60476 641 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 WBP4O75554 376 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 CDK6Q00534 326 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 ANKDD1AQ495B1 522 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 RORBQ92753 470 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 HRASLS5Q96KN8 279 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 ZNF347Q96SE7 839 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 RAD21L1Q9H4I0 556 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 TAC3Q9UHF0 121 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 ZNF451Q9Y4E5 1061 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 CFAP20Q9Y6A4 193 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 C5orf42Q9H799 3197 aa19.91■□□□□ 0.78
CCDC88B-203ENST00000359902 PCCBP05166 539 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 OPRD1P41143 372 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 BMXP51813 675 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 CDK3Q00526 305 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 PROX2Q3B8N5 592 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 METRNLQ641Q3 311 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 ZBTB46Q86UZ6 589 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 LRRTM4Q86VH4 590 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 C17orf64Q86WR6 236 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 ZNF540Q8NDQ6 660 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 BORCS5Q969J3 196 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 FEVQ99581 238 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 RHBGQ9H310 441 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 PCDHGA6Q9Y5G7 932 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 PLPP1O14494 284 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 KRT20P35900 424 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 RANBP1P43487 201 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 MASP1P48740 699 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 CRB2Q5IJ48 1285 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 ENTHD1Q8IYW4 607 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 OR4C15Q8NGM1 316 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 OR5K2Q8NHB8 316 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 APH1BQ8WW43 257 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 LZICQ8WZA0 190 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 ZNF300Q96RE9 604 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 ZNF717Q9BY31 904 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 EPS8L2Q9H6S3 715 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 MIEF1Q9NQG6 463 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 GALNT8Q9NY28 637 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 THAP10Q9P2Z0 257 aaPredicted RBP19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 ICKQ9UPZ9 632 aa19.9■□□□□ 0.78
CCDC88B-203ENST00000359902 CLPXO76031 633 aa19.89■□□□□ 0.77
CCDC88B-203ENST00000359902 KRT75O95678 551 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms