RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 PTCHD3Q3KNS1 767 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 TICAM1Q8IUC6 712 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 ZNF283Q8N7M2 679 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 FAM86B1Q8N7N1 296 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 ACTL8Q9H568 366 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 MAPK3P27361 379 aaPredicted RBP17.76■□□□□ 0.43
SHANK1-202ENST00000359082 TUBA3EQ6PEY2 450 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 KCTD13Q8WZ19 329 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 OSTF1Q92882 214 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 TMEM125Q96AQ2 219 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 GIMAP2Q9UG22 337 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 OAS1P00973 400 aaKnown RBP17.76■□□□□ 0.43
SHANK1-202ENST00000359082 COQ8AQ8NI60 647 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 POLDIP3Q9BY77 421 aaKnown RBP17.76■□□□□ 0.43
SHANK1-202ENST00000359082 ZBTB26Q9HCK0 441 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 I3L521 148 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 ZNF30P17039 623 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 GNRHRP30968 328 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 PER3P56645 1201 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 TMIGD1Q6UXZ0 262 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 OR9A1PQ8NGU1 263 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 SLC30A2Q9BRI3 323 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 BCAS3Q9H6U6 928 aa17.76■□□□□ 0.43
SHANK1-202ENST00000359082 C19orf25Q9UFG5 118 aaPredicted RBP17.76■□□□□ 0.43
SHANK1-202ENST00000359082 PROM1O43490 865 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 NRIP1P48552 1158 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 LRRC37A5PQ49AS3 106 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 MS4A13Q5J8X5 152 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 SPANXN4Q5MJ08 99 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 CLDN19Q8N6F1 224 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 MSLNLQ96KJ4 702 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.75■□□□□ 0.43
SHANK1-202ENST00000359082 SERTAD3Q9UJW9 196 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 ARVCFO00192 962 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 KCNJ13O60928 360 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 MT-ND5P03915 603 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 ELK4P28324 431 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 LCN1P31025 176 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 AGTR2P50052 363 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 CRHR2Q13324 411 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 RABL3Q5HYI8 236 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 C22orf39Q6P5X5 142 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 CNKSR3Q6P9H4 555 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 AGTRAPQ6RW13 159 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 FCAMRQ8WWV6 532 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 RAB8BQ92930 207 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 C17orf62Q9BQA9 187 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 STRA6Q9BX79 667 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 TM9SF3Q9HD45 589 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 NR2C1P13056 603 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 C3orf33Q6P1S2 294 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 PHTF2Q8N3S3 785 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 FAXDC2Q96IV6 333 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 CUEDC1Q9NWM3 386 aaPredicted RBP17.75■□□□□ 0.43
SHANK1-202ENST00000359082 FNTBP49356 437 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 BTBD16Q32M84 506 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 TCEANCQ8N8B7 351 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 SMG8Q8ND04 991 aaKnown RBP17.75■□□□□ 0.43
SHANK1-202ENST00000359082 FAM120CQ9NX05 1096 aaKnown RBP17.75■□□□□ 0.43
SHANK1-202ENST00000359082 TBX10O75333 385 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 GPX6P59796 221 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 TLE2Q04725 743 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 ZNF267Q14586 743 aaPredicted RBP17.75■□□□□ 0.43
SHANK1-202ENST00000359082 DTX3Q8N9I9 347 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 ARHGAP9Q9BRR9 750 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 OR8D2Q9GZM6 311 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.75■□□□□ 0.43
SHANK1-202ENST00000359082 TAS2R10Q9NYW0 307 aa17.75■□□□□ 0.43
SHANK1-202ENST00000359082 ISPDA4D126 451 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 EBLN1P0CF75 366 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 FPR1P21462 350 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 GRIK2Q13002 908 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 FLYWCH1Q4VC44 716 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 SLC35B2Q8TB61 432 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 TWNKQ96RR1 684 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 SOX2P48431 317 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 NSMAFQ92636 917 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 YTHDF1Q9BYJ9 559 aaKnown RBP17.74■□□□□ 0.43
SHANK1-202ENST00000359082 WDR37Q9Y2I8 494 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 EXOSC1Q9Y3B2 195 aaKnown RBP17.74■□□□□ 0.43
SHANK1-202ENST00000359082 AFDNP55196 1824 aaKnown RBP17.74■□□□□ 0.43
SHANK1-202ENST00000359082 CAMTA1Q9Y6Y1 1673 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 M0R129 80 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 SLC25A11Q02978 314 aaKnown RBP17.74■□□□□ 0.43
SHANK1-202ENST00000359082 KIAA1614Q5VZ46 1190 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 TIGD4Q8IY51 512 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 ZNF709Q8N972 641 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 OR4C15Q8NGM1 316 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 TMEM121BQ9BXQ6 578 aaPredicted RBP17.74■□□□□ 0.43
SHANK1-202ENST00000359082 SMOC2Q9H3U7 446 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 RPF2Q9H7B2 306 aaKnown RBP17.74■□□□□ 0.43
SHANK1-202ENST00000359082 TAS2R43P59537 309 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 ZNF630Q2M218 657 aaPredicted RBP17.74■□□□□ 0.43
SHANK1-202ENST00000359082 CHRFAM7AQ494W8 412 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 SMARCD2Q92925 531 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 NLE1Q9NVX2 485 aaPredicted RBP17.74■□□□□ 0.43
SHANK1-202ENST00000359082 ACTR3BQ9P1U1 418 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 LEFTY2O00292 366 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 NPR2P20594 1047 aa17.74■□□□□ 0.43
SHANK1-202ENST00000359082 PRMT2P55345 433 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms