RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 EPHA1P21709 976 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SHC2P98077 582 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ELOCQ15369 112 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 CST6Q15828 149 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 RABL3Q5HYI8 236 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 HACD2Q6Y1H2 254 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 B3GNT6Q6ZMB0 384 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ARFGAP1Q8N6T3 406 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 C10orf82Q8WW14 230 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SMARCD2Q92925 531 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SDSLQ96GA7 329 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 FCRL3Q96P31 734 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 WACQ9BTA9 647 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ATG5Q9H1Y0 275 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 MGAT4AQ9UM21 535 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 INO80Q9ULG1 1556 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 F5H5K5 113 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 AP1G1O43747 822 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ENSAO43768 121 aaKnown RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 TOXO94900 526 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 CSNK1EP49674 416 aaKnown RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SLC36A4Q6YBV0 504 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 OR5D16Q8NGK9 328 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 GPR150Q8NGU9 434 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 BBS10Q8TAM1 723 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SUSD3Q96L08 255 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SLC5A7Q9GZV3 580 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 PCDHGA8Q9Y5G5 932 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 MAS1P04201 325 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 STAT5AP42229 794 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF41P51814 821 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 CTBP2P56545 445 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 RGS21Q2M5E4 152 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 KHDC1Q4VXA5 237 aaKnown RBP7.09□□□□□ -1.27
VPS13A-202ENST00000357409 Q7L0L9 218 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 CNTD1Q8N815 330 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 CRELD1Q96HD1 420 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 PITX2Q99697 317 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 Q9N2J8 555 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 SLC2A4RGQ9NR83 387 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 PDP2Q9P2J9 529 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 DIP2AQ14689 1571 aa7.09□□□□□ -1.27
VPS13A-202ENST00000357409 TRBC2A0A5B9 178 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 SLC30A4O14863 429 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 EDF1O60869 148 aaKnown RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 CCNKO75909 580 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 RPS17P08708 135 aaKnown RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 ZNF35P13682 527 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 IRF2P14316 349 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 C4BPBP20851 252 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 PEX2P28328 305 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 BMP8BP34820 402 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 EIF2S3P41091 472 aaKnown RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 PRKCIP41743 596 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 RGS19P49795 217 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 AIF1P55008 147 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 SMIM11AP58511 58 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 DLX2Q07687 328 aaPredicted RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 C9orf152Q5JTZ5 239 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 XKRXQ6PP77 449 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 AGTRAPQ6RW13 159 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 BMP8AQ7Z5Y6 402 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 NET1Q7Z628 596 aaPredicted RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 LIX1LQ8IVB5 337 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 FAM217AQ8IXS0 508 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 FITM2Q8N6M3 262 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 ZSCAN4Q8NAM6 433 aaPredicted RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 OR9K2Q8NGE7 335 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 OR5AR1Q8NGP9 310 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 CANT1Q8WVQ1 401 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 HSPA12BQ96MM6 686 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 MCOLN1Q9GZU1 580 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 TRNAU1APQ9NX07 287 aaKnown RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 COQ3Q9NZJ6 369 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 USP36Q9P275 1121 aaKnown RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 CRNNQ9UBG3 495 aaPredicted RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 CSTAP01040 98 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 ELK4P28324 431 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 RFC3P40938 356 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 SIRPAP78324 504 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 ADAM17P78536 824 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 HSF5Q4G112 596 aaPredicted RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 RPS26P11Q5JNZ5 115 aaPredicted RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 C22orf39Q6P5X5 142 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 Q6ZSR6 202 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 LAPTM4BQ86VI4 370 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 PHTF2Q8N3S3 785 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 MYRFLQ96LU7 910 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 GPATCH1Q9BRR8 931 aaKnown RBP7.09□□□□□ -1.28
VPS13A-202ENST00000357409 DPH7Q9BTV6 452 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 SH2B3Q9UQQ2 575 aa7.09□□□□□ -1.28
VPS13A-202ENST00000357409 TLR4O00206 839 aa7.08□□□□□ -1.28
VPS13A-202ENST00000357409 PRAMEF12O95522 483 aa7.08□□□□□ -1.28
VPS13A-202ENST00000357409 RAB28P51157 221 aa7.08□□□□□ -1.28
VPS13A-202ENST00000357409 HAGHLQ6PII5 290 aaPredicted RBP7.08□□□□□ -1.28
VPS13A-202ENST00000357409 ARSKQ6UWY0 536 aa7.08□□□□□ -1.28
VPS13A-202ENST00000357409 ARPINQ7Z6K5 226 aa7.08□□□□□ -1.28
VPS13A-202ENST00000357409 PQLC1Q8N2U9 271 aa7.08□□□□□ -1.28
VPS13A-202ENST00000357409 GALNT6Q8NCL4 622 aa7.08□□□□□ -1.28
VPS13A-202ENST00000357409 OR2L2Q8NH16 312 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms