RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 RNF151Q2KHN1 245 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 TNFAIP8L2Q6P589 184 aaPredicted RBP17.09■□□□□ 0.33
SMAD4-201ENST00000342988 NAT16Q8N8M0 369 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 PHOX2BQ99453 314 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 SNRNP25Q9BV90 132 aaKnown RBP17.09■□□□□ 0.33
SMAD4-201ENST00000342988 MMP27Q9H306 513 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 FAIMQ9NVQ4 179 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 NAALAD2Q9Y3Q0 740 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 DICER1Q9UPY3 1922 aaKnown RBP17.09■□□□□ 0.33
SMAD4-201ENST00000342988 PRDM15P57071 1507 aaPredicted RBP17.09■□□□□ 0.33
SMAD4-201ENST00000342988 POP4O95707 220 aaKnown RBP17.09■□□□□ 0.33
SMAD4-201ENST00000342988 MPSTP25325 297 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 MYLK3Q32MK0 819 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 DDX1Q92499 740 aaKnown RBP17.09■□□□□ 0.33
SMAD4-201ENST00000342988 G6PC3Q9BUM1 346 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 RAI2Q9Y5P3 530 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 METTL15P1P0C7V9 234 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 PSD4Q8NDX1 1056 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 NANOS1Q8WY41 292 aaKnown RBP17.09■□□□□ 0.33
SMAD4-201ENST00000342988 MYLIPQ8WY64 445 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 NENFQ9UMX5 172 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 NCANO14594 1321 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 SEC16AO15027 2179 aa17.09■□□□□ 0.33
SMAD4-201ENST00000342988 FFAR2O15552 330 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 TNFP01375 233 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 RAB11BQ15907 218 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 MEDAGQ5VYS4 303 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 NEIL3Q8TAT5 605 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 MMAAQ8IVH4 418 aaKnown RBP17.08■□□□□ 0.33
SMAD4-201ENST00000342988 ITFG2Q969R8 447 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 EIF2B4Q9UI10 523 aaKnown RBP17.08■□□□□ 0.33
SMAD4-201ENST00000342988 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.08■□□□□ 0.333e-12■□□□□ 9.1
SMAD4-201ENST00000342988 NPIPA7E9PJI5 369 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 EPHX1P07099 455 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 NPIPA8P0DM63 369 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 MYCLP1P12525 358 aaPredicted RBP17.08■□□□□ 0.33
SMAD4-201ENST00000342988 DNASE1P24855 282 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 RBM39Q14498 530 aaKnown RBP17.08■□□□□ 0.33
SMAD4-201ENST00000342988 PGAP1Q75T13 922 aa17.08■□□□□ 0.33
SMAD4-201ENST00000342988 USP42Q9H9J4 1324 aaKnown RBP17.08■□□□□ 0.32
SMAD4-201ENST00000342988 CHD3Q12873 2000 aaKnown RBP17.08■□□□□ 0.32
SMAD4-201ENST00000342988 DISP2A7MBM2 1401 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 C6orf141Q5SZD1 244 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 FUNDC2Q9BWH2 189 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 OR6C74A6NCV1 312 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 NEMP2A6NFY4 417 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 PCDH7O60245 1069 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 MAXP61244 160 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 SMAD3P84022 425 aaKnown RBP17.08■□□□□ 0.32
SMAD4-201ENST00000342988 SLC18A2Q05940 514 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 GINS1Q14691 196 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 ESPNLQ6ZVH7 1005 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 NPLOC4Q8TAT6 608 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 ARMC5Q96C12 935 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 MYOCQ99972 504 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 PTCH2Q9Y6C5 1203 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 FRMPD1Q5SYB0 1578 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 PTGER3P43115 390 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 HSPA7P48741 367 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 TMEM225Q6GV28 225 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 PYROXD2Q8N2H3 581 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 DNAJC22Q8N4W6 341 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 SORCS1Q8WY21 1168 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 C12orf71A8MTZ7 269 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 WNT3AP56704 352 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 MTMR8Q96EF0 704 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 SIX4Q9UIU6 781 aa17.08■□□□□ 0.32
SMAD4-201ENST00000342988 APC2O95996 2303 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 TPPPO94811 219 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 PEX2P28328 305 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 PRAMEF13Q5VWM6 474 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 B3GLCTQ6Y288 498 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 NMUR1Q9HB89 426 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 LRRTM2O43300 516 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 CREB1P16220 341 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 DYRK1AQ13627 763 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 BCL2L15Q5TBC7 163 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 COL21A1Q96P44 957 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 LOC102723532A0A0G2JNH3 316 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 KITLGP21583 273 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 CPT2P23786 658 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 PLA2G16P53816 162 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 ZNF92Q03936 586 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 LY6KQ17RY6 165 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 PRR22Q8IZ63 422 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 FGGYQ96C11 551 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 STRADBQ9C0K7 418 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 COQ10BQ9H8M1 238 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 TAS2R9Q9NYW1 312 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 CBY1Q9Y3M2 126 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 SCN3AQ9NY46 2000 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 PHYHO14832 338 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 GLSO94925 669 aaPredicted RBP17.07■□□□□ 0.32
SMAD4-201ENST00000342988 PRKCGP05129 697 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 TAS2R30P59541 319 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 ARL6IP1Q15041 203 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 RABL3Q5HYI8 236 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 MAB21L3Q8N8X9 362 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 ZNF439Q8NDP4 499 aa17.07■□□□□ 0.32
SMAD4-201ENST00000342988 TSPEARQ8WU66 669 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms