RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 POU4F2Q12837 409 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SIX1Q15475 284 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RPE65Q16518 533 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 UBE2SQ16763 222 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 CPEB4Q17RY0 729 aaKnown RBP eCLIP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ASTE1Q2TB18 679 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF260Q3ZCT1 412 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 KLF17Q5JT82 389 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RAET1GQ6H3X3 334 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TMEM214Q6NUQ4 689 aaKnown RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 NHLRC1Q6VVB1 395 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF704Q6ZNC4 412 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RRAGAQ7L523 313 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 VASH2Q86V25 355 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 JAMLQ86YT9 394 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 REXO1L1PQ8IX06 675 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RIMKLAQ8IXN7 391 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 FTSJ3Q8IY81 847 aaKnown RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 FRMD1Q8N878 549 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 Q8NFD4 153 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 OR1L3Q8NH93 324 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 CCDC110Q8TBZ0 833 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 Q8TCH9 128 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 MAGEC3Q8TD91 643 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SYN2Q92777 582 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 EEF2KMTQ96G04 330 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 MAGEB18Q96M61 343 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 NUDT22Q9BRQ3 303 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 GPR63Q9BZJ6 419 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SP110Q9HB58 689 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 FGF22Q9HCT0 170 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TRMT1Q9NXH9 659 aaKnown RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ARL15Q9NXU5 204 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF624Q9P2J8 865 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF282Q9UDV7 671 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SLC24A2Q9UI40 661 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF639Q9UID6 485 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 STAP1Q9ULZ2 295 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TMCO1Q9UM00 188 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SCINQ9Y6U3 715 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SVILO95425 2214 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 A0A0J9YYE9 177 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 LOC285095A0A1B0GVY8 99 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 GOLGA8BA8MQT2 603 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SHISA9B4DS77 424 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 H3BMM5 538 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 GFYI3L273 518 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 PPP6CO00743 305 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SPRY3O43610 288 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 PIP5K1CO60331 668 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ECEL1O95672 775 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 OTCP00480 354 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TRBC1P01850 177 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TUBB4AP04350 444 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 LIPFP07098 398 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 MYBL1P10243 752 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZFXP17010 805 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ACHEP22303 614 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 JAK1P23458 1154 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 NR2F2P24468 414 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 IGFBP5P24593 272 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 GPD2P43304 727 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 CCNHP51946 323 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 GAS1P54826 345 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TMEM33P57088 247 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 OR1D5P58170 312 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SLC26A5P58743 744 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RPS15AP62244 130 aaKnown RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 AMPD3Q01432 767 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 DLG1Q12959 904 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TNK1Q13470 666 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 OXA1LQ15070 435 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZIC1Q15915 447 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 CNGA3Q16281 694 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 Q3ZCU0 254 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 GLIPR1L2Q4G1C9 344 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TMEM41BQ5BJD5 291 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 FBXO48Q5FWF7 155 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TCTEX1D4Q5JR98 221 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 SV2BQ7L1I2 683 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TRMT1LQ7Z2T5 733 aaKnown RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 GATAD2AQ86YP4 633 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF655Q8N720 491 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF675Q8TD23 568 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RXFP2Q8WXD0 754 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RLN3Q8WXF3 142 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 HGDQ93099 445 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RAB39BQ96DA2 213 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 PKNOX2Q96KN3 472 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 C1orf147Q96MC9 270 aaPredicted RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 TIGD1Q96MW7 591 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 OR2A14Q96R47 310 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 NPAS2Q99743 824 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 RBM4BQ9BQ04 359 aaKnown RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 MRPL45Q9BRJ2 306 aaKnown RBP1.39□□□□□ -2.19
LINC00643-201ENST00000334389 ABCG8Q9H221 673 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 BOLA2Q9H3K6 86 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 HRH4Q9H3N8 390 aa1.39□□□□□ -2.19
LINC00643-201ENST00000334389 AURKAIP1Q9NWT8 199 aaPredicted RBP1.39□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms