RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 C1orf52Q8N6N3 182 aaKnown RBP12.52□□□□□ -0.4
MSH2-201ENST00000233146 CAMKVQ8NCB2 501 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 C1orf109Q9NX04 203 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 SPHK1Q9NYA1 384 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 CNOT2Q9NZN8 540 aaKnown RBP12.52□□□□□ -0.4
MSH2-201ENST00000233146 FAM198AQ9UFP1 575 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 MIOXQ9UGB7 285 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 LRFN2Q9ULH4 789 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 SSR3Q9UNL2 185 aa12.52□□□□□ -0.4
MSH2-201ENST00000233146 AHDC1Q5TGY3 1603 aaPredicted RBP12.52□□□□□ -0.4
MSH2-201ENST00000233146 PRF1P14222 555 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 POU3F2P20265 443 aaPredicted RBP12.52□□□□□ -0.41
MSH2-201ENST00000233146 ITPKAP23677 461 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 INPP1P49441 399 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 DSC2Q02487 901 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 ANKRD39Q53RE8 183 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 ZNF667Q5HYK9 610 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 SLC6A19Q695T7 634 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 DMBX1Q8NFW5 382 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 WDR20Q8TBZ3 569 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 PKMYT1Q99640 499 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 SYNDIG1Q9H7V2 258 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 NDUFB11Q9NX14 153 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 THUMPD1Q9NXG2 353 aaKnown RBP12.52□□□□□ -0.41
MSH2-201ENST00000233146 EXO1Q9UQ84 846 aaKnown RBP12.52□□□□□ -0.41
MSH2-201ENST00000233146 A0A1B0GWJ7 208 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 GPR171O14626 319 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 CASC3O15234 703 aaKnown RBP12.52□□□□□ -0.41
MSH2-201ENST00000233146 CLN5O75503 358 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 SEMG1P04279 462 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 S100A8P05109 93 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 SULT1A3P0DMM9 295 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 SULT1A4P0DMN0 295 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 CALCRP30988 508 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 CAPZA1P52907 286 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 FAM98CQ17RN3 349 aaKnown RBP12.52□□□□□ -0.41
MSH2-201ENST00000233146 PRAMEF19Q5SWL8 479 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 ATG9BQ674R7 924 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 PLAG1Q6DJT9 500 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 ZNF549Q6P9A3 640 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 PHACTR4Q8IZ21 702 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 C12orf45Q8N5I9 185 aaPredicted RBP12.52□□□□□ -0.41
MSH2-201ENST00000233146 GTF3AQ92664 365 aaKnown RBP12.52□□□□□ -0.41
MSH2-201ENST00000233146 OTUB1Q96FW1 271 aaPredicted RBP12.52□□□□□ -0.41
MSH2-201ENST00000233146 MALT1Q9UDY8 824 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 BTNL2Q9UIR0 455 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 TSPAN16Q9UKR8 245 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 FZD10Q9ULW2 581 aa12.52□□□□□ -0.41
MSH2-201ENST00000233146 COL2A1P02458 1487 aaPredicted RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 C17orf113A0A1B0GUU1 675 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 DBX1A6NMT0 343 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 D6RAR5 112 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 PER2O15055 1255 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 POP7O75817 140 aaKnown RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 ATG12O94817 140 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 KCNJ3P48549 501 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 ZNF57Q68EA5 555 aaPredicted RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 NKAIN4Q8IVV8 208 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 MOSPD2Q8NHP6 518 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 RNF139Q8WU17 664 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 MRPL45Q9BRJ2 306 aaKnown RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 CPEB1Q9BZB8 566 aaKnown RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 TXNL4BQ9NX01 149 aaKnown RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 SAMD4AQ9UPU9 718 aaKnown RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 S100A9P06702 114 aaKnown RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 HOXC6P09630 235 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 G6PDP11413 515 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 C4BPBP20851 252 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 P2RY4P51582 365 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 KIAA1024LP59773 190 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 VLDLRP98155 873 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 DEFA5Q01523 94 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 SURF1Q15526 300 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 ARHGAP15Q53QZ3 475 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 C3orf38Q5JPI3 329 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 FAM198BQ6UWH4 519 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 ZNF730Q6ZMV8 503 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 USP53Q70EK8 1073 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 PDZD3Q86UT5 571 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 C10orf111Q8N326 155 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 COQ8AQ8NI60 647 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 PPP3R2Q96LZ3 170 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 SEMA4BQ9NPR2 832 aaPredicted RBP12.51□□□□□ -0.41
MSH2-201ENST00000233146 SLC22A11Q9NSA0 550 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 TREX1Q9NSU2 369 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 TCEAL9Q9UHQ7 104 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 NPTNQ9Y639 398 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 DENND4AQ7Z401 1863 aa12.51□□□□□ -0.41
MSH2-201ENST00000233146 POM121CA8CG34 1229 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 TPST2O60704 377 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 FABP3P05413 133 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 SYPP08247 313 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 HIST1H2AGP0C0S8 130 aaPredicted RBP12.5□□□□□ -0.41
MSH2-201ENST00000233146 UROSP10746 265 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 CD1DP15813 335 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 ERCC2P18074 760 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 HIST1H2ADP20671 130 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 ACADLP28330 430 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 LCN1P31025 176 aa12.5□□□□□ -0.41
MSH2-201ENST00000233146 RORAP35398 523 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms