RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TAZQ16635 292 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 NKPD1Q17RQ9 610 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 C4orf46Q504U0 113 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 PAPD7Q5XG87 772 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 NPNTQ6UXI9 565 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 BBS12Q6ZW61 710 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 EIF3MQ7L2H7 374 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 MINDY2Q8NBR6 621 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ST7LQ8TDW4 575 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM40Q8WWA1 233 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RNF31Q96EP0 1072 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 THOC3Q96J01 351 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 APOLD1Q96LR9 279 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SCGB3A2Q96PL1 93 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 KCNC2Q96PR1 638 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 KCTD15Q96SI1 283 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 CTRCQ99895 268 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ZFYVE21Q9BQ24 234 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 BDH2Q9BUT1 245 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 NPLQ9BXD5 320 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RDH8Q9NYR8 311 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TMEM5Q9Y2B1 443 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RNF215Q9Y6U7 377 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 IQCMA0A1B0GVH7 501 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 WRBO00258 174 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SRPX2O60687 465 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 F3P13726 295 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 FOSL1P15407 271 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TRAF3Q13114 568 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TRA2AQ13595 282 aaKnown RBP eCLIP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 DSC3Q14574 896 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 PLEKHS1Q5SXH7 462 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SLC30A6Q6NXT4 461 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 BOLLQ8N9W6 283 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 NAXEQ8NCW5 288 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 OR10T2Q8NGX3 314 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SLC39A7Q92504 469 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 CCDC74AQ96AQ1 378 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 BORCS8Q96FH0 119 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 DPH7Q9BTV6 452 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 LRTM1Q9HBL6 345 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ARNT2Q9HBZ2 717 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 PTPRHQ9HD43 1115 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SPAARA0A1B0GVQ0 90 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 CYB5BO43169 146 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TGFB1P01137 390 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 GLB1P16278 677 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SSR4P51571 173 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 HK3P52790 923 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 CLRN1P58418 232 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 GRIK2Q13002 908 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ARSHQ5FYA8 562 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 EARS2Q5JPH6 523 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 KYAT3Q6YP21 454 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TAS1R1Q7RTX1 841 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 IZUMO1Q8IYV9 350 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 MAGEE2Q8TD90 523 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SLC5A11Q8WWX8 675 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 WDR77Q9BQA1 342 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 UGT2B28Q9BY64 529 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 OCEL1Q9H607 264 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TM9SF3Q9HD45 589 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SLC24A2Q9UI40 661 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 DICER1Q9UPY3 1922 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 NPEPPSL1A6NEC2 478 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SCO2O43819 266 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RAB36O95755 333 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 SERPINA1P01009 418 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 EPOP01588 193 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 MC3RP41968 323 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 UGT2B15P54855 530 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 EEF1A2Q05639 463 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 FRG1Q14331 258 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TSTD2Q5T7W7 516 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RNASEH2BQ5TBB1 312 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF549Q6P9A3 640 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RGS9BPQ6ZS82 235 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 CHRDQ9H2X0 955 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 RHOJQ9H4E5 214 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 EHD1Q9H4M9 534 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 FKRPQ9H9S5 495 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ZCCHC3Q9NUD5 404 aaKnown RBP4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ARL8BQ9NVJ2 186 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 ACTR10Q9NZ32 417 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 PFDN2Q9UHV9 154 aa4.84□□□□□ -1.63
SCN1A-218ENST00000640036 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.84□□□□□ -1.64
SCN1A-218ENST00000640036 TCP11X1B4DZS4 312 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 SURF4O15260 269 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 MFSD11O43934 449 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 PRAMEF11O60813 436 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 LRP3O75074 770 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 RASAL1O95294 804 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 CD70P32970 193 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 KIR2DL3P43628 341 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 KIR3DL1P43629 444 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 RGS6P49758 472 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 CACNA2D1P54289 1103 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 JAG1P78504 1218 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 ZFP1Q6P2D0 407 aa4.84□□□□□ -1.64
SCN1A-218ENST00000640036 LRP10Q7Z4F1 713 aa4.84□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms