RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 ZDHHC8Q9ULC8 765 aa2.88□□□□□ -1.95
VIM-210ENST00000637053 ADAMTS5Q9UNA0 930 aa2.88□□□□□ -1.95
VIM-210ENST00000637053 HPSEQ9Y251 543 aa2.88□□□□□ -1.95
VIM-210ENST00000637053 EIF3LQ9Y262 564 aaKnown RBP2.88□□□□□ -1.95
VIM-210ENST00000637053 WBP11Q9Y2W2 641 aaKnown RBP2.88□□□□□ -1.95
VIM-210ENST00000637053 TMEM184BQ9Y519 407 aaPredicted RBP2.88□□□□□ -1.95
VIM-210ENST00000637053 FADS3Q9Y5Q0 445 aa2.88□□□□□ -1.95
VIM-210ENST00000637053 V9GYQ6 96 aa2.88□□□□□ -1.95
VIM-210ENST00000637053 BAZ1BQ9UIG0 1483 aaKnown RBP2.88□□□□□ -1.95
VIM-210ENST00000637053 SPATA31A1Q5TZJ5 1347 aa2.88□□□□□ -1.95
VIM-210ENST00000637053 SPATA31A5Q5VU36 1347 aa2.88□□□□□ -1.95
VIM-210ENST00000637053 SPATA31A7Q8IWB4 1347 aa2.88□□□□□ -1.95
VIM-210ENST00000637053 ZNF644Q9H582 1327 aaPredicted RBP2.88□□□□□ -1.95
VIM-210ENST00000637053 MAGEA13PA6NCF6 341 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 EFCAB10A6NFE3 127 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 MGAT4DA6NG13 374 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PRAMEF25A6NGN4 478 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PRSS29PA6NIE9 313 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 DRGXA6NNA5 263 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ZNF785A8K8V0 405 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 MIF4GDA9UHW6 222 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 ANKRD66B4E2M5 251 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PRAMEF26H0Y7S4 382 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 IFNL4K9M1U5 179 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ARPC3O15145 178 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PI15O43692 258 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 DUX1O43812 170 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 UGDHO60701 494 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PRAMEF4O60810 478 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PRAMEF11O60813 436 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ATP9AO75110 1047 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ATP2C2O75185 946 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 LRCH4O75427 683 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ERN1O75460 977 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 UPK3AO75631 287 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CNTN5O94779 1100 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 WDR47O94967 919 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 STBD1O95210 358 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CRYZL1O95825 349 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 DHFRP00374 187 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 MT-ND1P03886 318 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 C4BPAP04003 597 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 AMY1AP04745 511 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ICAM1P05362 532 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CD1AP06126 327 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CSF1RP07333 972 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 GRPP07492 148 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 SPATA31D3P0C874 917 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 GSTT2P0CG29 244 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 GSTT2BP0CG30 244 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CBR1P16152 277 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 MX1P20591 662 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 HNF1AP20823 631 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PAICSP22234 425 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 EEF1B2P24534 225 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 FPR2P25090 351 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ITGA3P26006 1051 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 KLRC2P26717 231 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 HSD11B1P28845 292 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 IFNA8P32881 189 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CYP2C18P33260 490 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 IGHMBP2P38935 993 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 CD79BP40259 229 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 MAGEA11P43364 429 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ALDH3B2P48448 385 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PTDSS1P48651 473 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 NDST2P52849 883 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 IST1P53990 364 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PRKAG1P54619 331 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 RAD23BP54727 409 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 GALCP54803 685 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 F2RL1P55085 397 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CDH13P55290 713 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 NUP107P57740 925 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CXCR4P61073 352 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 VSNL1P62760 191 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 RPL10AP62906 217 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 POU6F2P78424 691 aaPredicted RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 SIM1P81133 766 aaPredicted RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 IRF8Q02556 426 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CXCL9Q07325 125 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 ZFP36L1Q07352 338 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 MRPL49Q13405 166 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 CSHL1Q14406 222 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 HLXQ14774 488 aaPredicted RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 FAM189A2Q15884 450 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 UGCGQ16739 394 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 PPP1R3AQ16821 1122 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 BMT2Q1RMZ1 405 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 VWC2Q2TAL6 325 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 USP41Q3LFD5 358 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 GTDC1Q4AE62 458 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 KLHL22Q53GT1 634 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 XKR7Q5GH72 579 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 COQ5Q5HYK3 327 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 FAM47AQ5JRC9 791 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 CELF3Q5SZQ8 465 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 SPOUT1Q5T280 376 aaKnown RBP2.87□□□□□ -1.95
VIM-210ENST00000637053 HES5Q5TA89 166 aa2.87□□□□□ -1.95
VIM-210ENST00000637053 SEL1L2Q5TEA6 688 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms