RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 KCNC2Q96PR1 638 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 CD180Q99467 661 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 TBCDQ9BTW9 1192 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 REEP4Q9H6H4 257 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 ATP6V1HQ9UI12 483 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 PCDHGA5Q9Y5G8 931 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 ADAMTS9Q9P2N4 1935 aa17.55■□□□□ 0.4
CLN3-254ENST00000637050 A0A0A6YYD5 115 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 LY6G6EA0A0G2JKS1 128 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 ARHGAP10A1A4S6 786 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 TLCD2A6NGC4 264 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 SLC9B1P1A6NJY1 282 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 GABRR3A8MPY1 467 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 H0YGG7 62 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 P2RX6O15547 441 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 B4GAT1O43505 415 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 COX7A2P14406 83 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 PNLIPP16233 465 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 SSR2P43308 183 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 KIR3DL1P43629 444 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 TSFMP43897 325 aaKnown RBP17.54■□□□□ 0.4
CLN3-254ENST00000637050 GSTM5P46439 218 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 MAPK12P53778 367 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 MTTPP55157 894 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 GFERP55789 205 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 ARF3P61204 181 aaPredicted RBP17.54■□□□□ 0.4
CLN3-254ENST00000637050 GPLD1P80108 840 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 PDE7AQ13946 482 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 NKAIN2Q5VXU1 208 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 PRMT9Q6P2P2 845 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 TRIM40Q6P9F5 258 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 DLEU7Q6UYE1 221 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 ZNF793Q6ZN11 406 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 FAM92BQ6ZTR7 304 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 GPR180Q86V85 440 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 KCT2Q8NC54 265 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 CAMKVQ8NCB2 501 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 OR6C4Q8NGE1 309 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 OR2I1PQ8NGU4 316 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 NCSTNQ92542 709 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 GAL3ST3Q96A11 431 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 RERGQ96A58 199 aaPredicted RBP17.54■□□□□ 0.4
CLN3-254ENST00000637050 COQ8BQ96D53 544 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 ZDHHC12Q96GR4 267 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 SLC39A3Q9BRY0 314 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 IL1RL2Q9HB29 575 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 FAM60AQ9NP50 221 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 SPAG4Q9NPE6 437 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 SLAMF8Q9P0V8 285 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 SLC7A8Q9UHI5 535 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 U3KQA8 63 aa17.54■□□□□ 0.4
CLN3-254ENST00000637050 VGLL3A8MV65 326 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 SIGLEC6O43699 453 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 KIF1CO43896 1103 aaKnown RBP17.53■□□□□ 0.4
CLN3-254ENST00000637050 TMPRSS11DO60235 418 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 SH3BP5O60239 455 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 PCDHGA12O60330 932 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 FURINP09958 794 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 PIM1P11309 404 aaPredicted RBP17.53■□□□□ 0.4
CLN3-254ENST00000637050 RPL3P39023 403 aaKnown RBP17.53■□□□□ 0.4
CLN3-254ENST00000637050 TRA2BP62995 288 aaKnown RBP17.53■□□□□ 0.4
CLN3-254ENST00000637050 TGM3Q08188 693 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 C2orf80Q0P641 193 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 NR0B2Q15466 257 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 PIGGQ5H8A4 983 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 MANEAQ5SRI9 462 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 OR4F3Q6IEY1 312 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 DHDDSQ86SQ9 333 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 FBXW8Q8N3Y1 598 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 AMER3Q8N944 861 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 TM4SF18Q96CE8 201 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 MTERF3Q96E29 417 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 TCTN2Q96GX1 697 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 AHCYL2Q96HN2 611 aaKnown RBP17.53■□□□□ 0.4
CLN3-254ENST00000637050 TGM7Q96PF1 710 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 PRPF18Q99633 342 aaKnown RBP17.53■□□□□ 0.4
CLN3-254ENST00000637050 ARRDC1-AS1Q9H2J1 176 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 SERHLQ9NQF3 203 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 GMEB2Q9UKD1 530 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 MAN2B2Q9Y2E5 1009 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 BTBD3Q9Y2F9 522 aa17.53■□□□□ 0.4
CLN3-254ENST00000637050 TTC28Q96AY4 2481 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 A0A0G2JN53 185 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 DUX1O43812 170 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 SCN2BO60939 215 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 RASSF9O75901 435 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 PDE5AO76074 875 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 SCELO95171 688 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 IL3P08700 152 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 SMIM10L1P0DMW3 83 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 LAMP1P11279 417 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 HIST1H1TP22492 207 aaPredicted RBP17.52■□□□□ 0.4
CLN3-254ENST00000637050 ATP5A1P25705 553 aaKnown RBP17.52■□□□□ 0.4
CLN3-254ENST00000637050 PPM1FP49593 454 aaPredicted RBP17.52■□□□□ 0.4
CLN3-254ENST00000637050 WNT3P56703 355 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 MC1RQ01726 317 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 CAPRIN1Q14444 709 aaKnown RBP17.52■□□□□ 0.4
CLN3-254ENST00000637050 CPTPQ5TA50 214 aa17.52■□□□□ 0.4
CLN3-254ENST00000637050 ZC3H14Q6PJT7 736 aaKnown RBP17.52■□□□□ 0.4
CLN3-254ENST00000637050 R3HCC1LQ7Z5L2 792 aaKnown RBP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms