RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 MRFAP1Q9Y605 127 aa12.87□□□□□ -0.35
SNX1-214ENST00000625244 A8MVJ9 347 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 H7BY64 318 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 H7C0C1 242 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 GOT2P00505 430 aaKnown RBP12.86□□□□□ -0.35
SNX1-214ENST00000625244 IL10P22301 178 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 ATP5OP48047 213 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 AGFG1P52594 562 aaKnown RBP12.86□□□□□ -0.35
SNX1-214ENST00000625244 NAP1L1P55209 391 aaKnown RBP12.86□□□□□ -0.35
SNX1-214ENST00000625244 BTG2P78543 158 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 FOXO1Q12778 655 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 KIF5AQ12840 1032 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 HYAL2Q12891 473 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 CAPRIN1Q14444 709 aaKnown RBP12.86□□□□□ -0.35
SNX1-214ENST00000625244 SLC10A1Q14973 349 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 IL20RBQ6UXL0 311 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 RAD9BQ6WBX8 426 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 MAATS1Q7Z4T9 603 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 HIPK1Q86Z02 1210 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 LRRC8AQ8IWT6 810 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 PPFIBP2Q8ND30 876 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 MAPK1IP1LQ8NDC0 245 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 OR13J1Q8NGT2 312 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 OR9A1PQ8NGU1 263 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 SLC35G2Q8TBE7 412 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 MAGEC3Q8TD91 643 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 TBC1D20Q96BZ9 403 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 CALR3Q96L12 384 aaKnown RBP12.86□□□□□ -0.35
SNX1-214ENST00000625244 PTCHD1Q96NR3 888 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 PRAP1Q96NZ9 151 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 EPB41L4BQ9H329 900 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 EXO5Q9H790 373 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 LIN28AQ9H9Z2 209 aaKnown RBP12.86□□□□□ -0.35
SNX1-214ENST00000625244 IL1RL2Q9HB29 575 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 ABCF3Q9NUQ8 709 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 HPF1Q9NWY4 346 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 ZNF223Q9UK11 482 aaPredicted RBP12.86□□□□□ -0.35
SNX1-214ENST00000625244 KIAA1549Q9HCM3 1950 aa12.86□□□□□ -0.35
SNX1-214ENST00000625244 USF3Q68DE3 2245 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 TRGV5A0A0B4J1U4 118 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 PRKNO60260 465 aaPredicted RBP12.85□□□□□ -0.35
SNX1-214ENST00000625244 B4GALT2O60909 372 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 OR6B1O95007 311 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 CCNDBP1O95273 360 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 CLCN2P51788 898 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 RUNX1T1Q06455 604 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 ZNF750Q32MQ0 723 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 XKR6Q5GH73 641 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 KCTD11Q693B1 232 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 KIAA0930Q6ICG6 404 aaPredicted RBP12.85□□□□□ -0.35
SNX1-214ENST00000625244 GK5Q6ZS86 529 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 ZNF534Q76KX8 674 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 LDB1Q86U70 411 aaPredicted RBP12.85□□□□□ -0.35
SNX1-214ENST00000625244 KLHDC8BQ8IXV7 354 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 FBXW8Q8N3Y1 598 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 FOPNLQ96NB1 174 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 TTC1Q99614 292 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 FAM173AQ9BQD7 235 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 GSX2Q9BZM3 304 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 SLC2A6Q9UGQ3 507 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 YARS2Q9Y2Z4 477 aaKnown RBP12.85□□□□□ -0.35
SNX1-214ENST00000625244 PKD1L1Q8TDX9 2849 aa12.85□□□□□ -0.35
SNX1-214ENST00000625244 ROS1P08922 2347 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 hCG_1818297A0A087WSY0 165 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 KCNE1BA0A087WTH5 132 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 SH3D21A4FU49 640 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 EEF1E1-BLOC1S5C9J1V9 151 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 MYO1CO00159 1063 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 EEF1E1O43324 174 aaKnown RBP12.84□□□□□ -0.35
SNX1-214ENST00000625244 KIF5CO60282 957 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 HCN1O60741 890 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 OR2J2O76002 312 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 MAOAP21397 527 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 CNR1P21554 472 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 PTH2RP49190 550 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 PNLIPRP1P54315 467 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 OLR1P78380 273 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 ABATP80404 500 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 ACKR1Q16570 336 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 HYAL4Q2M3T9 481 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 ANKRD20A4Q4UJ75 823 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 TMEM139Q8IV31 216 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 TSGA10Q9BZW7 698 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 UBTD1Q9HAC8 227 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 SEMA4BQ9NPR2 832 aaPredicted RBP12.84□□□□□ -0.35
SNX1-214ENST00000625244 TUBA8Q9NY65 449 aaPredicted RBP12.84□□□□□ -0.35
SNX1-214ENST00000625244 JKAMPQ9P055 326 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 C6orf203Q9P0P8 240 aaPredicted RBP12.84□□□□□ -0.35
SNX1-214ENST00000625244 EIF3LQ9Y262 564 aaKnown RBP12.84□□□□□ -0.35
SNX1-214ENST00000625244 PCDHGB3Q9Y5G1 929 aa12.84□□□□□ -0.35
SNX1-214ENST00000625244 A0A087X1B8 175 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 TCRBV16S1A1N1A0A5B0 115 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 SMAPO00193 183 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 SIAH2O43255 324 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 CHST10O43529 356 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 MATN4O95460 622 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 EPPINO95925 133 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 CCDC175P0C221 793 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 TIMP3P35625 211 aa12.83□□□□□ -0.36
SNX1-214ENST00000625244 SOX3P41225 446 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms