RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 FAM69BQ5VUD6 431 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 GTF2H2CQ6P1K8 395 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 PRMT9Q6P2P2 845 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 SUSD1Q6UWL2 747 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 MRGPREQ86SM8 312 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 KLHDC8AQ8IYD2 350 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 TCAIMQ8N3R3 496 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 CLEC1AQ8NC01 280 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 TRPC4APQ8TEL6 797 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 ZNF480Q8WV37 535 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 VPS50Q96JG6 964 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 HIST1H2AHQ96KK5 128 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 CCDC138Q96M89 665 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 HIST1H2AJQ99878 128 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 PLCD4Q9BRC7 762 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 H2AFJQ9BTM1 129 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 ACAT2Q9BWD1 397 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 C5AR2Q9P296 337 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 OPTCQ9UBM4 332 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 DCTN4Q9UJW0 460 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 ZNF225Q9UK10 706 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 CDC14AQ9UNH5 594 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 USH1CQ9Y6N9 552 aa12.03□□□□□ -0.48
PNKP-217ENST00000625216 MYO18BQ8IUG5 2567 aa12.02□□□□□ -0.48
PNKP-217ENST00000625216 A0A0J9YVX5 310 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 PYCARD-AS1I3L0S3 204 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 K7EPI3 171 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 TXNDC9O14530 226 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 OR7A17O14581 309 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 DPM1O60762 260 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 CNOT3O75175 753 aaKnown RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 STK16O75716 305 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 WDR47O94967 919 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 SNUPNO95149 360 aaKnown RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 ZIC2O95409 532 aaPredicted RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 PDGFAP04085 211 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 JUNP05412 331 aaKnown RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 ITGAXP20702 1163 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 MMP11P24347 488 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 HNMTP50135 292 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 SOX8P57073 446 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 NAA20P61599 178 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 TRAF3Q13114 568 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 SLC9A5Q14940 896 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 RBBP7Q16576 425 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 MUM1Q2TAK8 710 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 DCAF10Q5QP82 559 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 GARNL3Q5VVW2 1013 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 ICE2Q659A1 982 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 FRMPD2BQ6IN97 320 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 ZNF425Q6IV72 752 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 METTL2BQ6P1Q9 378 aaKnown RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 AGTRAPQ6RW13 159 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 LRRC70Q7Z2Q7 622 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 PAQR7Q86WK9 346 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 TEX9Q8N6V9 391 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 CCDC197Q8NCU1 140 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 PPFIBP2Q8ND30 876 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 FDCSPQ8NFU4 85 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 OR52B6Q8NGF0 335 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 PYCR2Q96C36 320 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 MVB12AQ96EY5 273 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 KCNA7Q96RP8 456 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 ZNF382Q96SR6 550 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 SMAD5Q99717 465 aaKnown RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 TMEM120AQ9BXJ8 343 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 ILKAPQ9H0C8 392 aaPredicted RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 PCBD2Q9H0N5 130 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 ATG10Q9H0Y0 220 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 ZNF304Q9HCX3 659 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 SLC6A20Q9NP91 592 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 MID1IP1Q9NPA3 183 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 ATP13A2Q9NQ11 1180 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 P4HTMQ9NXG6 502 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 GPR83Q9NYM4 423 aa12.02□□□□□ -0.49
PNKP-217ENST00000625216 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 SNRNP200O75643 2136 aaKnown RBP12.02□□□□□ -0.49
PNKP-217ENST00000625216 LOC105369274A0A096LPK9 316 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 LOC102723532A0A0G2JNH3 316 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 VSTM2BA6NLU5 285 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 H0YGG7 62 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 OR4F21O95013 312 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 EIF2S1P05198 315 aaKnown RBP12.01□□□□□ -0.49
PNKP-217ENST00000625216 UMODP07911 640 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 EZRP15311 586 aaKnown RBP12.01□□□□□ -0.49
PNKP-217ENST00000625216 RPL14P50914 215 aaKnown RBP12.01□□□□□ -0.49
PNKP-217ENST00000625216 FOXA1P55317 472 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 ARF3P61204 181 aaPredicted RBP12.01□□□□□ -0.49
PNKP-217ENST00000625216 NAE1Q13564 534 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 TSTA3Q13630 321 aaPredicted RBP12.01□□□□□ -0.49
PNKP-217ENST00000625216 PDCD2Q16342 344 aaPredicted RBP12.01□□□□□ -0.49
PNKP-217ENST00000625216 NKG7Q16617 165 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 PRTGQ2VWP7 1150 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 VWA5B1Q5TIE3 1220 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 CLEC6AQ6EIG7 209 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 LETMD1Q6P1Q0 360 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 PPP1R32Q7Z5V6 425 aa12.01□□□□□ -0.49
PNKP-217ENST00000625216 WDR75Q8IWA0 830 aaKnown RBP12.01□□□□□ -0.49
PNKP-217ENST00000625216 LRRC56Q8IYG6 542 aaPredicted RBP12.01□□□□□ -0.49
PNKP-217ENST00000625216 OR4N4Q8N0Y3 316 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms