RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CFAP20Q9Y6A4 193 aaKnown RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 U3KQ87 197 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 PDCD11Q14690 1871 aaKnown RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 FAM240BA0A1B0GVZ2 78 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 TNFRSF11BO00300 401 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 CCNB2O95067 398 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ODC1P11926 461 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 POU3F3P20264 500 aaPredicted RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 AKAP5P24588 427 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 GPC1P35052 558 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 BRCC3P46736 316 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ARPP19P56211 112 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 HOXC5Q00444 222 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 PTPRCAPQ14761 206 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 IQCCQ4KMZ1 466 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 XKR4Q5GH76 650 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 BICRALQ6AI39 1079 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 SUSD1Q6UWL2 747 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 SIDT2Q8NBJ9 832 aaKnown RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 UTP15Q8TED0 518 aaKnown RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 CREB3L4Q8TEY5 395 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 NELL1Q92832 810 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ULK4Q96C45 1275 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 C7orf34Q96L11 122 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ZNF578Q96N58 590 aaPredicted RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 KLHL5Q96PQ7 755 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 TM9SF2Q99805 663 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 MARVELD1Q9BSK0 173 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 POLR1EQ9GZS1 481 aaKnown RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 MTIF3Q9H2K0 278 aaKnown RBP10.42□□□□□ -0.74
UPF3A-212ENST00000619079 PIGUQ9H490 435 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 ANKRA2Q9H9E1 313 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 CSNK1G1Q9HCP0 422 aa10.42□□□□□ -0.74
UPF3A-212ENST00000619079 PCM1Q15154 2024 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 PDE4DIPQ5VU43 2346 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 A0A1W2PQL4 384 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 KCNK5O95279 499 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 PRLP01236 227 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 CYP17A1P05093 508 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 PRKACAP17612 351 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 GPX2P18283 190 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 MAPK1P28482 360 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 CLCN4P51793 760 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 RABGGTBP53611 331 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 HMGCS1Q01581 520 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 GALEQ14376 348 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 WSCD2Q2TBF2 565 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 PLEKHM3Q6ZWE6 761 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 FAM124AQ86V42 546 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 NLRP8Q86W28 1048 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 GPALPP1Q8IXQ4 340 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 OR8H3Q8N146 312 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 ZNF680Q8NEM1 530 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 MAPKAP1Q9BPZ7 522 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 INPP5KQ9BT40 448 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 GOLGA2P5Q9HBQ8 144 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 NDUFB11Q9NX14 153 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 MPP6Q9NZW5 540 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 TRPS1Q9UHF7 1281 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 PCDHGB7Q9Y5F8 929 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 GBF1Q92538 1859 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 J3KR12 359 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 CLIC1O00299 241 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SUV39H1O43463 412 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 TSC22D2O75157 780 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SCO1O75880 301 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 IFNA16P05015 189 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SLC2A2P11168 524 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 ARSBP15848 533 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 RHOQP17081 205 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 PTBP1P26599 531 aaKnown RBP eCLIP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 PBX3P40426 434 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 ETV1P50549 477 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 ZNF140P52738 457 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 MLLT6P55198 1093 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SOX4Q06945 474 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SMARCB1Q12824 385 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SPHARQ15513 63 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 COL28A1Q2UY09 1125 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SLC39A12Q504Y0 691 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 TMEM240Q5SV17 173 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 MEDAGQ5VYS4 303 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 PDE12Q6L8Q7 609 aaKnown RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 METTL2BQ6P1Q9 378 aaKnown RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 TMEM65Q6PI78 240 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 METAP1DQ6UB28 335 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 RGL4Q8IZJ4 473 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 GHDCQ8N2G8 530 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 VANGL1Q8TAA9 524 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 HMCESQ96FZ2 354 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 MSANTD3Q96H12 275 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 TPD52L3Q96J77 140 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 EXOC2Q96KP1 924 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 QRFPRQ96P65 431 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SEMA3CQ99985 751 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SLC29A3Q9BZD2 475 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 SLC7A5P2Q9GIP4 190 aa10.41□□□□□ -0.74
UPF3A-212ENST00000619079 RANBP3Q9H6Z4 567 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-212ENST00000619079 FOLH1BQ9HBA9 442 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms