RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	KLK3	P07288	261 aa	Predicted RBP	12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	NPPB	P16860	134 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	GNAZ	P19086	355 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	CD22	P20273	847 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	CCND1	P24385	295 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	VARS	P26640	1264 aa	Known RBP	12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	PEBP1	P30086	187 aa	Known RBP	12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	SHMT2	P34897	504 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	UQCRFS1	P47985	274 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	IDH3A	P50213	366 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	IRF8	Q02556	426 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	IL10RA	Q13651	578 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	DOC2A	Q14183	400 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	UGT3A2	Q3SY77	523 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	C4orf17	Q53FE4	359 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	XKR6	Q5GH73	641 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	CATSPERE	Q5SY80	951 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	TMTC4	Q5T4D3	741 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	FHL5	Q5TD97	284 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	CPZ	Q66K79	652 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	ARMC6	Q6NXE6	501 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	ZNF517	Q6ZMY9	492 aa	Predicted RBP	12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	DDIAS	Q8IXT1	998 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	KIRREL3	Q8IZU9	778 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	METTL6	Q8TCB7	284 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	SLC5A11	Q8WWX8	675 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	MR1	Q95460	341 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	ZNF501	Q96CX3	271 aa	Predicted RBP	12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	LRFN5	Q96NI6	719 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	OR52B2	Q96RD2	323 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	MIPEP	Q99797	713 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	ING2	Q9H160	280 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	TUBB1	Q9H4B7	451 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	WDR55	Q9H6Y2	383 aa	Predicted RBP	12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	CUEDC1	Q9NWM3	386 aa	Predicted RBP	12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	SOHLH2	Q9NX45	425 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	GPRC5B	Q9NZH0	403 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	PCDHGB7	Q9Y5F8	929 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	DNAJC15	Q9Y5T4	150 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	KCNE2	Q9Y6J6	123 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	HIVEP3	Q5T1R4	2406 aa		12.09	□□□□□ -0.47
UPF1-208	ENST00000600012	KCNE1B	A0A087WTH5	132 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	OR6C74	A6NCV1	312 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	ARGFX	A6NJG6	315 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	BTN3A3	O00478	584 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	SDHD	O14521	159 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	CDH1	P12830	882 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	GNLY	P22749	145 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	EPHA3	P29320	983 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	CCL11	P51671	97 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	CHAF1B	Q13112	559 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	GPR19	Q15760	415 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	CPSF6	Q16630	551 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	GGTA1P	Q4G0N0	100 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	SGO1	Q5FBB7	561 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	GRHL2	Q6ISB3	625 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	SLCO4C1	Q6ZQN7	724 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	AMIGO1	Q86WK6	493 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	FAM20C	Q8IXL6	584 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	L3MBTL4	Q8NA19	623 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	HMGCLL1	Q8TB92	370 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	C19orf60	Q96EN9	201 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	C3orf30	Q96M34	536 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	RILP	Q96NA2	401 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	HBEGF	Q99075	208 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	HAUS8	Q9BT25	410 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	CHST8	Q9H2A9	424 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	SRMS	Q9H3Y6	488 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	FANCE	Q9HB96	536 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	SPHK1	Q9NYA1	384 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	G3BP2	Q9UN86	482 aa	Known RBP	12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	ZNF451	Q9Y4E5	1061 aa		12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	SPEN	Q96T58	3664 aa	Known RBP	12.08	□□□□□ -0.48
UPF1-208	ENST00000600012	ATP6AP2	A0A1C7CYW4	349 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	TRPC5OS	A6NMA1	111 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	ISM1	B1AKI9	464 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	MANBA	O00462	879 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	ATP6AP2	O75787	350 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	SORBS2	O94875	1100 aa	Known RBP	12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	CHEK2	O96017	543 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	CHRM5	P08912	532 aa	Predicted RBP	12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	RAB40AL	P0C0E4	278 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	LINC00032	P0C843	101 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	MEF2A	Q02078	507 aa	Predicted RBP	12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	SLBP	Q14493	270 aa	Known RBP eCLIP	12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	ZRSR2	Q15696	482 aa	Known RBP	12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	NADK2	Q4G0N4	442 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	LIPJ	Q5W064	366 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	ICE2	Q659A1	982 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	NXN	Q6DKJ4	435 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	NXPE4	Q6UWF7	544 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	C17orf64	Q86WR6	236 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	HPS6	Q86YV9	775 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	ADGRF3	Q8IZF5	1079 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	ANKS4B	Q8N8V4	417 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	OR2A1	Q8NGT9	310 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	ADAMTS17	Q8TE56	1095 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	SLC29A3	Q9BZD2	475 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	SPNS1	Q9H2V7	528 aa		12.07	□□□□□ -0.48
UPF1-208	ENST00000600012	MEAF6	Q9HAF1	191 aa		12.07	□□□□□ -0.48

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