RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ZNF33BQ06732 778 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 CKAP4Q07065 602 aaKnown RBP14.17□□□□□ -0.14
LIG1-215ENST00000597901 SLBPQ14493 270 aaKnown RBP eCLIP14.17□□□□□ -0.14
LIG1-215ENST00000597901 EXT1Q16394 746 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 PRAMEF9Q5VWM5 478 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 PAPD4Q6PIY7 484 aaKnown RBP14.17□□□□□ -0.14
LIG1-215ENST00000597901 RAPH1Q70E73 1250 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 KRT78Q8N1N4 520 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 TTLQ8NG68 377 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 STAG3L4Q8TBR4 150 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 MAGEB10Q96LZ2 347 aaPredicted RBP14.17□□□□□ -0.14
LIG1-215ENST00000597901 LPAR4Q99677 370 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 PITHD1Q9GZP4 211 aaPredicted RBP14.17□□□□□ -0.14
LIG1-215ENST00000597901 RHBGQ9H310 441 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 MMP25Q9NPA2 562 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 ZDHHC18Q9NUE0 388 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 WWOXQ9NZC7 414 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 COPG2Q9UBF2 871 aa14.17□□□□□ -0.14
LIG1-215ENST00000597901 SHANK1Q9Y566 2161 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 OR5H15A6NDH6 313 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 WIPF3A6NGB9 483 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 ANKDD1BA6NHY2 528 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 C4orf51C9J302 202 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 DDAH2O95865 285 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 RNF224P0DH78 156 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 MYBL2P10244 700 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 RNH1P13489 461 aaKnown RBP14.16□□□□□ -0.14
LIG1-215ENST00000597901 EDN3P14138 238 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 STXBP1P61764 594 aaKnown RBP14.16□□□□□ -0.14
LIG1-215ENST00000597901 DLG1Q12959 904 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 NAB1Q13506 487 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 RUNX2Q13950 521 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 ACER2Q5QJU3 275 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 FCRLBQ6BAA4 426 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 C8orf74Q6P047 294 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 CMC1Q7Z7K0 106 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.16□□□□□ -0.14
LIG1-215ENST00000597901 CYP4X1Q8N118 509 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 CA13Q8N1Q1 262 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 BCORP1Q8N888 145 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 SNX31Q8N9S9 440 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 CCT6BQ92526 530 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 MS4A6EQ96DS6 147 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 SEC16BQ96JE7 1060 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 FAR2Q96K12 515 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 TAAR6Q96RI8 345 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 CD244Q9BZW8 370 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 EHD1Q9H4M9 534 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 ALG9Q9H6U8 611 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 NMRAL1Q9HBL8 299 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 ERRFI1Q9UJM3 462 aaPredicted RBP14.16□□□□□ -0.14
LIG1-215ENST00000597901 RNF112Q9ULX5 631 aa14.16□□□□□ -0.14
LIG1-215ENST00000597901 DOCK10Q96BY6 2186 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 PSMD12O00232 456 aaPredicted RBP14.15□□□□□ -0.14
LIG1-215ENST00000597901 E2F3O00716 465 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 CLEC3AO75596 197 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 TBX6O95947 436 aaPredicted RBP14.15□□□□□ -0.14
LIG1-215ENST00000597901 SLC35E2BP0CK96 405 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 TFEBP19484 476 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 GSTM2P28161 218 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 HNRNPH1P31943 449 aaKnown RBP14.15□□□□□ -0.14
LIG1-215ENST00000597901 SLC26A5P58743 744 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 DOC2AQ14183 400 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 EFTUD2Q15029 972 aaKnown RBP eCLIP14.15□□□□□ -0.143e-6■■■□□ 18.3
LIG1-215ENST00000597901 WHAMMP3Q1A5X7 153 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 XKR6Q5GH73 641 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 ZNF324BQ6AW86 544 aaPredicted RBP14.15□□□□□ -0.14
LIG1-215ENST00000597901 FAM180AQ6UWF9 173 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 QSOX2Q6ZRP7 698 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 VN1R5Q7Z5H4 357 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 CRLF3Q8IUI8 442 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 PDPRQ8NCN5 879 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 SUN3Q8TAQ9 357 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 NXNL1Q96CM4 212 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 MRRFQ96E11 262 aaKnown RBP14.15□□□□□ -0.14
LIG1-215ENST00000597901 WDR34Q96EX3 536 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 C16orf45Q96MC5 204 aaPredicted RBP14.15□□□□□ -0.14
LIG1-215ENST00000597901 NPAS2Q99743 824 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 NPLQ9BXD5 320 aaPredicted RBP14.15□□□□□ -0.14
LIG1-215ENST00000597901 NECTIN3Q9NQS3 549 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 PRDM9Q9NQV7 894 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 IGSF5Q9NSI5 407 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 OLAHQ9NV23 265 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 PLEKHB1Q9UF11 243 aaPredicted RBP14.15□□□□□ -0.14
LIG1-215ENST00000597901 SLC5A6Q9Y289 635 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 ACOT9Q9Y305 439 aa14.15□□□□□ -0.14
LIG1-215ENST00000597901 A0A0G2JN53 185 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 ERI3O43414 337 aaKnown RBP14.14□□□□□ -0.15
LIG1-215ENST00000597901 CCNT2O60583 730 aaKnown RBP14.14□□□□□ -0.15
LIG1-215ENST00000597901 PRAMEF2O60811 474 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 S100BP04271 92 aaPredicted RBP14.14□□□□□ -0.15
LIG1-215ENST00000597901 LTA4HP09960 611 aaKnown RBP14.14□□□□□ -0.15
LIG1-215ENST00000597901 EPORP19235 508 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 MAOAP21397 527 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 CD96P40200 585 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 IRF8Q02556 426 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 LAPTM5Q13571 262 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 SLMAPQ14BN4 828 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 PDK4Q16654 411 aa14.14□□□□□ -0.15
LIG1-215ENST00000597901 MEP1AQ16819 746 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms