RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 ACACBO00763 2458 aa10.02□□□□□ -0.81
LIG1-210ENST00000596332 A0A087WV48 116 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 A0A0G2JN53 185 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 OR2W5A6NFC9 320 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 SAP18O00422 153 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 TXNDC9O14530 226 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 EEDO75530 441 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 JRKO75564 520 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 SCELO95171 688 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 RECKO95980 971 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 JUNP05412 331 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 UMODP07911 640 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 HBQ1P09105 142 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 PCNAP12004 261 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 LIFP15018 202 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 HPDP32754 393 aaPredicted RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 PCBP4P57723 403 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 PPP2R2AP63151 447 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 RAE1P78406 368 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 DCDP81605 110 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 OCRLQ01968 901 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 CUL3Q13618 768 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 KIAA0040Q15053 153 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 HIST2H2ACQ16777 129 aaPredicted RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 DEFB134Q4QY38 66 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 HIST2H2AA3Q6FI13 130 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 MRM1Q6IN84 353 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 SCIMPQ6UWF3 145 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 RNF165Q6ZSG1 346 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 TRIM46Q7Z4K8 759 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 VASH2Q86V25 355 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 SPACA3Q8IXA5 215 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 ESX1Q8N693 406 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 TTC29Q8NA56 475 aaPredicted RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 ZNF248Q8NDW4 579 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 OR2T11Q8NH01 316 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 ZCCHC10Q8TBK6 192 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 MGARPQ8TDB4 240 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 CHTF18Q8WVB6 975 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 ZNF75CPQ92670 426 aaPredicted RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 N4BP2L2Q92802 583 aaPredicted RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 UBE2E3Q969T4 207 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 MVB12AQ96EY5 273 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 NAF1Q96HR8 494 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 C3orf30Q96M34 536 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 CNTNAP3BQ96NU0 1288 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 CNTNAP3Q9BZ76 1288 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 SLC29A3Q9BZD2 475 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 ACPTQ9BZG2 426 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 REXO4Q9GZR2 422 aaKnown RBP10.01□□□□□ -0.81
LIG1-210ENST00000596332 ZNF304Q9HCX3 659 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 LANCL2Q9NS86 450 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 FAM53CQ9NYF3 392 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 CTSFQ9UBX1 484 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 CROTQ9UKG9 612 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 TRAF6Q9Y4K3 522 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 USP24Q9UPU5 2620 aa10.01□□□□□ -0.81
LIG1-210ENST00000596332 ZNF860A6NHJ4 632 aa10□□□□□ -0.81
LIG1-210ENST00000596332 NPIPB8E9PQR5 432 aa10□□□□□ -0.81
LIG1-210ENST00000596332 H0YIG0 161 aa10□□□□□ -0.81
LIG1-210ENST00000596332 ZNF195O14628 629 aa10□□□□□ -0.81
LIG1-210ENST00000596332 KLF11O14901 512 aa10□□□□□ -0.81
LIG1-210ENST00000596332 CHST10O43529 356 aa10□□□□□ -0.81
LIG1-210ENST00000596332 RDH16O75452 317 aa10□□□□□ -0.81
LIG1-210ENST00000596332 SERPIND1P05546 499 aa10□□□□□ -0.81
LIG1-210ENST00000596332 ENO1P06733 434 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 FURINP09958 794 aa10□□□□□ -0.81
LIG1-210ENST00000596332 RAB40ALP0C0E4 278 aa10□□□□□ -0.81
LIG1-210ENST00000596332 SLC35G6P0C7Q6 338 aa10□□□□□ -0.81
LIG1-210ENST00000596332 TCN2P20062 427 aa10□□□□□ -0.81
LIG1-210ENST00000596332 ATP5A1P25705 553 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 PTX3P26022 381 aaPredicted RBP10□□□□□ -0.81
LIG1-210ENST00000596332 TPP2P29144 1249 aaPredicted RBP10□□□□□ -0.81
LIG1-210ENST00000596332 SERPINB1P30740 379 aa10□□□□□ -0.81
LIG1-210ENST00000596332 SERPINB5P36952 375 aa10□□□□□ -0.81
LIG1-210ENST00000596332 SLC1A6P48664 564 aa10□□□□□ -0.81
LIG1-210ENST00000596332 HNRNPFP52597 415 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 PLA2G16P53816 162 aa10□□□□□ -0.81
LIG1-210ENST00000596332 ABCE1P61221 599 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 RPS18P62269 152 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 OLR1P78380 273 aa10□□□□□ -0.81
LIG1-210ENST00000596332 BTN3A2P78410 334 aa10□□□□□ -0.81
LIG1-210ENST00000596332 TLE3Q04726 772 aa10□□□□□ -0.81
LIG1-210ENST00000596332 DDX39BQ13838 428 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 DSG2Q14126 1118 aa10□□□□□ -0.81
LIG1-210ENST00000596332 SLC9A5Q14940 896 aa10□□□□□ -0.81
LIG1-210ENST00000596332 NKG7Q16617 165 aa10□□□□□ -0.81
LIG1-210ENST00000596332 SGO1Q5FBB7 561 aa10□□□□□ -0.81
LIG1-210ENST00000596332 VWA2Q5GFL6 755 aa10□□□□□ -0.81
LIG1-210ENST00000596332 PRMT9Q6P2P2 845 aa10□□□□□ -0.81
LIG1-210ENST00000596332 MYLK4Q86YV6 388 aaPredicted RBP10□□□□□ -0.81
LIG1-210ENST00000596332 ZC3H7AQ8IWR0 971 aaKnown RBP10□□□□□ -0.81
LIG1-210ENST00000596332 CA13Q8N1Q1 262 aa10□□□□□ -0.81
LIG1-210ENST00000596332 ZNF781Q8N8C0 355 aa10□□□□□ -0.81
LIG1-210ENST00000596332 TMEM52Q8NDY8 209 aa10□□□□□ -0.81
LIG1-210ENST00000596332 ADAMTS17Q8TE56 1095 aa10□□□□□ -0.81
LIG1-210ENST00000596332 MR1Q95460 341 aa10□□□□□ -0.81
LIG1-210ENST00000596332 UCN3Q969E3 161 aa10□□□□□ -0.81
LIG1-210ENST00000596332 GAL3ST3Q96A11 431 aa10□□□□□ -0.81
LIG1-210ENST00000596332 CMTM7Q96FZ5 175 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms